CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 107/250 (42.80%), Postives = 141/250 (56.40%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG  + V ++++ L                          ++  S   + AQN  V   GAFTGEVSA+ML ++   ++I+GHSERR    ES+D +  K A     GL  + C+GET  + E+G T  V A Q  A+   +    +  VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGNKQMVNELIAGLRTELSGVDGCGVAIAPPVMYLEQAKHAISGSPVALGAQNVDVNLSGAFTGEVSADMLKDIGAQYIIIGHSERRTWHAESDDAIAKKFAVLKQTGLIPVLCIGETEAENEAGKTEEVCARQIDAVLNTQGADAFKGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKKDATVAAQVIIQYGGSVNDKNAAELFAQPDIDGALVGGASLKADAFAAIVKAAAAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOUT (Triosephosphate isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSM (Triosephosphate isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSE (Triosephosphate isomerase OS=Escherichia coli (strain SE11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLU (Triosephosphate isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLI (Triosephosphate isomerase OS=Escherichia coli (strain K12) GN=tpiA PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLC (Triosephosphate isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL6 (Triosephosphate isomerase OS=Escherichia coli O6 GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL5 (Triosephosphate isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ECOK1 (Triosephosphate isomerase OS=Escherichia coli O1:K1 / APEC GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.381e-44
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = -2 
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ERWT97.381e-4442.80Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_ECOUT7.381e-4442.11Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSM7.381e-4442.11Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSE7.381e-4442.11Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLU7.381e-4442.11Triosephosphate isomerase OS=Escherichia coli O17:... [more]
TPIS_ECOLI7.381e-4442.11Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLC7.381e-4442.11Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOL67.381e-4442.11Triosephosphate isomerase OS=Escherichia coli O6 G... [more]
TPIS_ECOL57.381e-4442.11Triosephosphate isomerase OS=Escherichia coli O6:K... [more]
TPIS_ECOK17.381e-4442.11Triosephosphate isomerase OS=Escherichia coli O1:K... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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