CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:124..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.886e-69
Identity = 133/239 (55.65%), Postives = 165/239 (69.04%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GNWK NG  E +++++STLN A                      +S L S   VAAQNC+    GAFTGE+S  M+ +    WVILGHSERR +  E+++ +G KVA+AL   L VIAC+GE LE+RE+G+T  V+  QT+ IAE + +W+ VVLAYEPVWAIGTGK ATP QAQEVH +LR W + N+S EV+ S RIIYGGSV  ANC+ELA+Q DVDGFLVGGASLKPEFIDII +
Sbjct:   10 GNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPSIYLDFA--RSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDGFLVGGASLKPEFIDIINA 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.886e-69
Identity = 133/239 (55.65%), Postives = 165/239 (69.04%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GNWK NG  + ++++ +TLN A+                     +S L  +  VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +G KVA+AL  GL VIAC+GE L++RE+G T  VV  QTK IA+ + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR+WLK NVS  VA S RIIYGGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:   10 GNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTIYLDYA--RSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.131e-68
Identity = 128/235 (54.47%), Postives = 166/235 (70.64%), Query Frame = -2
Query:  258 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 962
            GNWK NG  + + +++ TLN A+                    +K  +   F VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +G KV++ALS+GL V+AC+GE L++RE+G T  VV E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:    9 GNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLK--VDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.929e-68
Identity = 132/239 (55.23%), Postives = 165/239 (69.04%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GNWK NG  + + +I  TL+ A                      +++L  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL++GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:    9 GNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.929e-68
Identity = 132/239 (55.23%), Postives = 165/239 (69.04%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GNWK NG  + + +I  TL+ A                      +++L  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL++GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:    9 GNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 258.07 bits (658), Expect = 5.612e-68
Identity = 131/239 (54.81%), Postives = 165/239 (69.04%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GNWK NG  + + +I  TL+ A                      +++L  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL++GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTG+ ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:    9 GNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.751e-67
Identity = 127/241 (52.70%), Postives = 166/241 (68.88%), Query Frame = -2
Query:  246 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERR--ALLNESNDFVGDKVAYALSQG-LKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 959
            NWKCN +  ++ ++VS  N A                      +  LR+DF  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR  A L ES+  +  K AYAL    L VI C+GE LE+RESG T+AV   Q +A+++ IS+W +VV+AYEPVWAIGTGKVATP QA++VH  +R WL +NVS +VAASTRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.805e-66
Identity = 131/242 (54.13%), Postives = 161/242 (66.53%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GNWK NG+  + K ++ +L++A                      +  L  + HVAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR++ NES++ V +KV +AL++GL V+AC+GETL +RESG T  V   Q  AIA KI +   W  VV+AYEPVWAIGTGKVA+P QAQEVH  LRKW K N  + V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEFIDI K+
Sbjct:   11 GNWKMNGSRADNKVLIHSLSEAHFCGDTEILIAAPFVYLNEV--RQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFIDICKA 250          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 3.079e-66
Identity = 126/240 (52.50%), Postives = 160/240 (66.67%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GNWK NG   ++ +IV+ L +                       K+++  +  VAAQNCW    GAFTGE+S  M+ ++ + WVILGHSERR +  E ++ V +KVA+AL  GLKVIAC+GETLE+RESG T  VV  Q KA+   I + W+N+VLAYEPVWAIGTGK ATP QAQ+VH  LR WL  NVS  V+ + RI YGGSV  AN KELA+  D+DGFLVGGASLKPEF++I+ +
Sbjct:    9 GNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYV--KTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.528e-65
Identity = 124/239 (51.88%), Postives = 164/239 (68.62%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 962
            GN+K NGT +++K IV  LN A+                     +++ + +  VAAQN + +  GAFTGE+SA  L++L + WVILGHSERR  L ES++F+  K  YAL  G+ VI C GE+ + R++G T+  V  Q  A+A++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:    9 GNFKMNGTRKDLKAIVDNLNNAQLDPNAEVVIAPPALYLDFVK-QNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ORYLA3.886e-6955.65Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPISB_DANRE3.886e-6955.65Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_LATCH1.131e-6854.47Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_DROYA1.929e-6855.23Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI1.929e-6855.23Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_DROME5.612e-6854.81Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_GRAVE4.751e-6752.70Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_SCHJA1.805e-6654.13Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_BOMMO3.079e-6652.50Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_NEUCR1.528e-6551.88Triosephosphate isomerase OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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