CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.141e-36
Identity = 94/250 (37.60%), Postives = 142/250 (56.80%), Query Frame = -2
Query:  234 GNWKCNGTSEEVKKIVST------LNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVK 962
            GNWK N T +E +  ++       LN A+                     + + +++ ++ AQN    + GAFTGE+SA+ML +++  +VI+GHSERR    E+N  V  K   A+  GL  I CVGE+LE+ E+G T AV+ +Q K   E + +   +V+AYEP+WAIGTGKVAT   AQ++     K+++   S ++     I YGGSV+ +N + L  Q D+DG LVGGASL+ + F ++I    +K
Sbjct:    8 GNWKMNKTYDEARDFINAFSNAYALNGAKISENIEYGIAPSFTNMSLFNKELLEKTNINLVAQNINENRSGAFTGEISAQMLKSINAKYVIVGHSERRQNYRETNKIVNQKAKAAIENGLIPIICVGESLEEYEAGKTKAVIKKQIKQSLEAL-DLSKIVVAYEPIWAIGTGKVATAEVAQQI----CKFIRSITSKDLI----IQYGGSVSPSNIENLMKQEDIDGALVGGASLEVDSFFELITFNALK 248          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_HERA2 (Triosephosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.141e-36
Identity = 89/188 (47.34%), Postives = 112/188 (59.57%), Query Frame = -2
Query:  249 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 803
            + AQN      GA+TGE++ +ML  L   +VILGHSERR    E++  +  K   AL+ GLK I CVGE   +R+SG   +VV  Q +     +S      VV+AYEPVWAIGTG  ATPA AQ +HA +R  L        A +  I YGGSV   N  EL AQPD+DG LVGGASLK  +FI I++
Sbjct:   61 LGAQNMHYEAKGAYTGEIAPQMLKELGCSYVILGHSERRQYFGETDALINRKAHAALANGLKPIVCVGEVKAERDSGQAESVVVGQLRGSLAGLSAEQLRGVVIAYEPVWAIGTGDTATPADAQAMHARIRAELAALSDQATADAVIIQYGGSVKPDNVDELMAQPDIDGALVGGASLKAADFIRIVR 248          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CUPTR (Triosephosphate isomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.141e-36
Identity = 90/179 (50.28%), Postives = 108/179 (60.34%), Query Frame = -2
Query:  267 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 797
            AQ+      GAFTGEV+A ML      +V++GHSERR    E++  V  K   AL  G+  + CVGETL QRE+G T AVV  Q +A+ E   +     VVLAYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   62 AQDVSAEARGAFTGEVAASMLGEFGCTYVLVGHSERRTYHGETDQAVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLEALTVEQLGRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAAR-DAGVAGRMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLKSE 239          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCV (Triosephosphate isomerase OS=Chlamydophila caviae GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.141e-36
Identity = 94/243 (38.68%), Postives = 131/243 (53.91%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQ-AEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHV--AAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 962
            GNWK + T++E K  +S      +                     +S+   D  +   AQN      GAFTGEVS  ML    + +V+LGHSE R + +E +  +  KV  A   G+  + C+GETLE RE+G+T  V++ Q      ++     V++AYEPVWAIGTGKVA+ A  QEVHA  R+ L    S E +    I+YGGSV   N +  A  PDVDG LVGGASL P+ F +++++
Sbjct:    9 GNWKMHKTAKEAKDFLSIFCPFVKEISPASLVGIAPAFTTLSACCESIKEMDSSIWLGAQNVHQDSSGAFTGEVSLPMLQEFHVNFVLLGHSECRHIFHEEDATIALKVGAAARSGVVPVLCIGETLEARENGTTKEVLSNQLMLGLAQLPETAPVIIAYEPVWAIGTGKVASTADVQEVHAFCREVLSRIFSKEKSEIISILYGGSVKADNAEGFARCPDVDGLLVGGASLDPQGFANVLRN 251          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.141e-36
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = -2
Query:  267 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 770
            GA+TGE+SAE+L +  I +V++GHSERR LL +  + +  K+++AL+ G+ VI CVGE+LEQRE G    +V +Q   IA  +S   W + +V+AYEP+WAIGTG+ A+P  AQ +HA++R+ L     A   +   ++YGGSV   N  ELAA PD++G LVGGASL  E
Sbjct:   83 GAYTGEISAELLTDSQIRYVLIGHSERRDLLGDHVEILKAKLSHALNAGMTVIYCVGESLEQREQGLAEQIVLQQICDIAPVVSAEQWQHQIVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQITPA--GSQIALLYGGSVKPENAVELAACPDINGALVGGASLNAE 251          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_THET2 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.491e-36
Identity = 86/188 (45.74%), Postives = 115/188 (61.17%), Query Frame = -2
Query:  243 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 797
            AQ+    K GA+TGEVSA ML +L   + I+GHSERR    E++  V +K    L +G+  I CVGE LE RE G  V     Q +   E +     + +V+AYEPVWAIGTGK ATP  A+ +H E+RK L +      A+  RI+YGGSVN  N  +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct:   62 AQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQEIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPD (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.491e-36
Identity = 90/234 (38.46%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        ++S   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIESAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPA (Triosephosphate isomerase OS=Mycobacterium paratuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.491e-36
Identity = 87/179 (48.60%), Postives = 110/179 (61.45%), Query Frame = -2
Query:  267 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 797
            AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE LE RE+G+ V    EQ +     +S      VV+AYEPVWAIGTG+VA+ + AQEV A +RK L    SA++A S R++YGGSVN  N  EL AQ D+DG LVGGASL  E
Sbjct:   68 AQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAATALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGE 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA1 (Triosephosphate isomerase OS=Mycobacterium avium (strain 104) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.491e-36
Identity = 87/179 (48.60%), Postives = 110/179 (61.45%), Query Frame = -2
Query:  267 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 797
            AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE LE RE+G+ V    EQ +     +S      VV+AYEPVWAIGTG+VA+ + AQEV A +RK L    SA++A S R++YGGSVN  N  EL AQ D+DG LVGGASL  E
Sbjct:   68 AQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAAAALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGE 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_FRAP2 (Triosephosphate isomerase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.491e-36
Identity = 90/243 (37.04%), Postives = 133/243 (54.73%), Query Frame = -2
Query:  243 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 962
            GNWK NG+S  +K++   +++                      +   L  +  V  QN      GA+TGE+SAEML ++   ++++GHSERR+L  E++  V  K+   +   +  + C+GE+LE R+ G    V+  Q   I E +S      V++AYEPVWAIGTG VA+  Q QE H  +R  L   V   +A + +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:    7 GNWKMNGSSASIKELCKGISEVNYNSEKVAVAVFPSSVYVKEVLAQ-LPKEIGVGLQNITFYDNGAYTGELSAEMLHDVGCNYLLIGHSERRSLFGETDQDVFKKLNKIIDTSVVPVVCIGESLEDRQGGRLEKVLTTQLSLILENLSIEQLARVIIAYEPVWAIGTGVVASLEQVQETHQFIRS-LVAKVDENLAKNMKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKASEFNEIINQA 247          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCPU1.141e-3637.60Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_HERA21.141e-3647.34Triosephosphate isomerase OS=Herpetosiphon auranti... [more]
TPIS_CUPTR1.141e-3650.28Triosephosphate isomerase OS=Cupriavidus taiwanens... [more]
TPIS_CHLCV1.141e-3638.68Triosephosphate isomerase OS=Chlamydophila caviae ... [more]
TPIS_ACIAD1.141e-3647.95Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]
TPIS_THET21.491e-3645.74Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_STRPD1.491e-3638.46Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_MYCPA1.491e-3648.60Triosephosphate isomerase OS=Mycobacterium paratub... [more]
TPIS_MYCA11.491e-3648.60Triosephosphate isomerase OS=Mycobacterium avium (... [more]
TPIS_FRAP21.491e-3637.04Triosephosphate isomerase OS=Francisella philomira... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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