CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_ACIF2 (Triosephosphate isomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.491e-36
Identity = 93/244 (38.11%), Postives = 131/244 (53.69%), Query Frame = -2
Query:  243 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI---SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 962
            GNWK NG S +   +   +  A                      +    S      QN +    GA+TGE+S  ML ++   +V++GHSERR +  ES+  +  K+  AL  GL  + CVGET  +R  G T AV+  Q +A+   +   ++  N+++AYEPVWAIGTG  A+P QAQ VH  +R+ L    SA++A    ++YGGSV G N   L  Q D+DG LVGGASL+  EFI I ++A
Sbjct:    8 GNWKMNGLSGDAVHLTQAILHAGLEPMRPEVVIFPPFTLLHAVSQEAKSSALRWGGQNLFWEASGAYTGEISGAMLRDMGCRYVLIGHSERRQIFAESDAQIVQKIKAALLSGLIPVVCVGETEAERAQGLTDAVLRRQLEAVLPLLNLEASQPNLIIAYEPVWAIGTGLSASPEQAQAVHVFIRE-LAAAYSAQLARRLLLLYGGSVKGNNAAALFDQADIDGALVGGASLQAGEFIQICRAA 250          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.947e-36
Identity = 92/232 (39.66%), Postives = 124/232 (53.45%), Query Frame = -2
Query:  273 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 962
            GNWK N T +E  ++V  L                        ++ V  S+  V AQN    + GA+TGE++ +ML  L + +VI+GHSERR   NE+++ V  KV  A    L  I C GE+LE+RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK
Sbjct:    8 GNWKMNKTVKEAVELVKELKPL-VKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLK 238          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BACST (Triosephosphate isomerase OS=Bacillus stearothermophilus GN=tpiA PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.947e-36
Identity = 96/245 (39.18%), Postives = 134/245 (54.69%), Query Frame = -2
Query:  246 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQT-KAIA----EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 962
            GNWK + T  E  + V  +                        V++   +D  + AQ       GA+TGEVS  ML +L + +VILGHSERR +  E+++ V  KV  A ++GL  I C GE+LE+RE+G T AVVA Q  KA+A    E++      V+AYEP+WAIGTGK +TP  A  V   +R  +      E A + RI YGGSV   N ++  AQ  +DG LVGGASL+P  F+ ++++
Sbjct:    8 GNWKMHKTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVK---QAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGPLVGGASLEPASFLQLVEA 249          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_VIBCH (Triosephosphate isomerase OS=Vibrio cholerae GN=tpiA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 96/250 (38.40%), Postives = 130/250 (52.00%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFH---VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V  +++ LN AE                     + +++   +   + AQN      GA+TG++S  ML +     +I+GHSERR    ES++FV  K A+    GL  + C+GET  Q E+G T AV A Q  A+  A  +   +  ++AYEP+WAIGTGK AT   AQ +HA +R  +     A VA    I YGGSV   N     AQPD+DG LVGGASL  + F  I K+A   K
Sbjct:    8 GNWKLNGSKAMVTDLLNGLN-AELEGVEGVDVVVAPPAMYLDLAERLIKEGGNKLILGAQNTDTHNSGAYTGDMSPAMLKDFGASHIIIGHSERRDYHKESDEFVAKKFAFLKENGLTPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAIGTGKAATADDAQRIHASIRALIAAK-DAAVAEQVIIQYGGSVKPENAASYFAQPDIDGALVGGASLDAKGFAAIAKAAAEAK 255          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPZ (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 89/234 (38.03%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPM (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M28 GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 89/234 (38.03%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPF (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 89/234 (38.03%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPC (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 89/234 (38.03%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPB (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 89/234 (38.03%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRP3 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M3 GN=tpiA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 89/234 (38.03%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACIF21.491e-3638.11Triosephosphate isomerase OS=Acidithiobacillus fer... [more]
TPIS_CLOBK1.947e-3639.66Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_BACST1.947e-3639.18Triosephosphate isomerase OS=Bacillus stearothermo... [more]
TPIS_VIBCH3.321e-3638.40Triosephosphate isomerase OS=Vibrio cholerae GN=tp... [more]
TPIS_STRPZ3.321e-3638.03Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPM3.321e-3638.03Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPF3.321e-3638.03Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPC3.321e-3638.03Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPB3.321e-3638.03Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP33.321e-3638.03Triosephosphate isomerase OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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