CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRP1 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M1 GN=tpiA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 89/234 (38.03%), Postives = 121/234 (51.71%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCS5 (Triosephosphate isomerase OS=Mycoplasma synoviae (strain 53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 97/241 (40.25%), Postives = 136/241 (56.43%), Query Frame = -2
Query:  252 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 962
            GNWK N T    K+ +                             + L+ +     +AAQN    + GA+TGEVSA+ML++L++ +VILGHSE+R    E+++ V  K   AL + L  I CVGETLE+  +G T  VV  Q  A  + + +   V++AYEP+WAIGTGKVAT   AQ+V     K++K+  S +    T + YGGSVN  N  EL++Q D+DGFLVGGASLK  +F D++
Sbjct:    8 GNWKMNSTFSTTKEFLKEFQSLYSLNSKTYNQKATFAVATPFTNLAALKDNDLNLKLAAQNMSFYEKGAYTGEVSADMLLDLNVSYVILGHSEQRQYHAETDENVNKKARLALEKNLTPIVCVGETLEEYLAGKTKEVVKAQLAASLKDL-DVTKVIVAYEPIWAIGTGKVATAQIAQDV----CKYIKELTSKQ----TVVQYGGSVNAKNIFELSSQEDIDGFLVGGASLKATDFSDLM 239          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA9 (Triosephosphate isomerase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 86/179 (48.04%), Postives = 107/179 (59.78%), Query Frame = -2
Query:  267 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 797
            AQ+  V   GA+TGEVS   L  L + +V++GHSERR    E +  V  K A AL  GL  I C+GE L+ RE+G  V       +     +S      VV+AYEPVWAIGTG+VA+ A AQEV A +R  L    +A+VA S R++YGGS N  N  E+ AQ DVDG LVGGASL  E
Sbjct:   68 AQDLSVYDSGAYTGEVSGAFLAKLGVTYVVVGHSERRQYHGEDDALVAAKAAAALKHGLTPIVCIGEALDIREAGDHVQYNVNSLRGSLAGLSAEQVGKVVIAYEPVWAIGTGRVASAADAQEVCAAIRAELAQIANADVAGSVRVLYGGSANAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_LACSS (Triosephosphate isomerase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.321e-36
Identity = 86/240 (35.83%), Postives = 130/240 (54.17%), Query Frame = -2
Query:  252 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 962
            GNWK N    +  + V+ +                        +++   +D  VAA+NC+  + GAFTGE S + L  + + +VI+GHSERR   +E+++ +  K        +  I C GE+LE RE+G     V+ Q     + +S     ++V+AYEP+WAIGTGK A+  QAQE+ A +R+ +       VA   RI YGGSV  AN KE+  + D+DG LVGGAS++P  F+D++
Sbjct:    8 GNWKMNMNPTQTTEFVNAIKANLPKFDQTESVIGAPAVDLPALLEAAKGTDLKVAAENCYFEEAGAFTGETSPKTLNEMGVDYVIIGHSERRDYFHETDEDINKKAHAIFKNNMTPIFCCGESLETREAGKAEEWVSNQVTEGLKGLSADQVSSMVIAYEPIWAIGTGKTASADQAQEICAVVRQTVAKLYDQTVADKVRIQYGGSVKPANVKEIMGKEDIDGGLVGGASMEPASFLDLV 247          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRSY (Triosephosphate isomerase OS=Streptococcus suis (strain 05ZYH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.337e-36
Identity = 88/234 (37.61%), Postives = 122/234 (52.14%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E +  V  +                        +     S+  VAAQNC+    GAFTGE S ++L  + + +V++GHSERR   +E+++ +  K       GL  I C GE+LE  E+G  V  V  Q  A  + ++     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSVN +N  E  A PDVDG LVGGASL+ E
Sbjct:    9 GNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAPAVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTADQVASLVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPSNVAEYMACPDVDGALVGGASLEAE 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRS2 (Triosephosphate isomerase OS=Streptococcus suis (strain 98HAH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.337e-36
Identity = 88/234 (37.61%), Postives = 122/234 (52.14%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   +E +  V  +                        +     S+  VAAQNC+    GAFTGE S ++L  + + +V++GHSERR   +E+++ +  K       GL  I C GE+LE  E+G  V  V  Q  A  + ++     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSVN +N  E  A PDVDG LVGGASL+ E
Sbjct:    9 GNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAPAVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTADQVASLVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPSNVAEYMACPDVDGALVGGASLEAE 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPG (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.337e-36
Identity = 89/232 (38.36%), Postives = 120/232 (51.72%), Query Frame = -2
Query:  273 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 962
            GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+
Sbjct:    9 GNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLE 240          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.337e-36
Identity = 90/234 (38.46%), Postives = 122/234 (52.14%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N   E+  ++V  L                        VKSV  ++  V AQN    + GA+TGE+S  ML +L + +VI+GHSERR   NE ++ +  K+  A    +  I C GE+L +RE+G T  V+  Q K   + +     + +V+AYEP+WAIGTGK AT  QA +  A +R  +        A   RI YGGSV  A  K    QP +DG LVGGASLKP+
Sbjct:    8 GNWKMNKNLEDALELVEELKPL-VRGAKCDVVLCPPYVCLDAVVKSVGGTNIKVGAQNMHYEESGAYTGEISPGMLKSLKVDYVIIGHSERRQYFNEKDETINKKIKKAFEHDIIPIVCCGESLLERENGITEEVLGRQIKLALKDLRKEQVEKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQ 240          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.337e-36
Identity = 86/177 (48.59%), Postives = 112/177 (63.28%), Query Frame = -2
Query:  294 RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 818
            RS F VA         GA+TGEVSAE+L +  I +V++GHSERR    ES   +  K   AL+ GLKVI CVGE+LEQRESG    VV +Q   +A  ++   W ++V+AYEP+WAIGTGK A+P  AQ +HA++R+ L    S    A+  I+YGGSV   N  ELAA PD++G L
Sbjct:   52 RSVFTVAQDVSRFGNMGAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGSVKAENAVELAACPDINGAL 226          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.664e-36
Identity = 93/234 (39.74%), Postives = 128/234 (54.70%), Query Frame = -2
Query:  267 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 959
            NWK N    E K++ + +                        V SVL+ S+  + AQN  + + GA TGEVS   L+++ +  VILGHSERR +  E++D +  KV  AL  GL+VI CVGE LE+RE+G   AV   Q K    ++S  + D V +AYEPVWAIGTGK A+P  A  +H+ +RK L      + A +  I YGGS+   N   L  + ++DG L+GGA LK E
Sbjct:    9 NWKMNMNRAEAKQLATEMKAG--LKDGKNKYMIAPSFTLLQDVASVLKGSNILLGAQNMGLEEKGAHTGEVSVLQLLDVGVQAVILGHSERRHIYKETDDLINKKVKLALKHGLEVILCVGELLEEREAGHAEAVCERQIKKGLAEVSAKDLDKVTIAYEPVWAIGTGKNASPEDADAIHSSIRKTLAALYGEKAAKNMIIQYGGSMKPENAAGLLKKHNIDGGLIGGAGLKTE 240          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRP13.321e-3638.03Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_MYCS53.321e-3640.25Triosephosphate isomerase OS=Mycoplasma synoviae (... [more]
TPIS_MYCA93.321e-3648.04Triosephosphate isomerase OS=Mycobacterium abscess... [more]
TPIS_LACSS3.321e-3635.83Triosephosphate isomerase OS=Lactobacillus sakei s... [more]
TPIS_STRSY4.337e-3637.61Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_STRS24.337e-3637.61Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_STRPG4.337e-3638.36Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_CLOK54.337e-3638.46Triosephosphate isomerase OS=Clostridium kluyveri ... [more]
TPIS3_RHIEC4.337e-3648.59Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]
TPIS_TREDE5.664e-3639.74Triosephosphate isomerase OS=Treponema denticola G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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