CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.263e-35
Identity = 91/247 (36.84%), Postives = 132/247 (53.44%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 962
            GNWK N T  + K+  S  NQ                        +    +     +A QN    + GA+TGE+SA+ML++L++ + I+GHSERR    E++  V  K   A+   +  + CVGETLE+ E+  T  V+  Q K   + + +   V++AYEP+WAIGTGK ATP QAQ+V   +RK    N++        I+YGGSV+  N ++L  Q D++G LVGGASLK +    IK  T+ K
Sbjct:    8 GNWKMNKTFTQTKEFFSAFNQLYIENKNKINQNLDFAVALPAINVAAFSKNTTKLELAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDV-DLSKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVD--SFIKLLTLNK 243          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BRAJA (Triosephosphate isomerase OS=Bradyrhizobium japonicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.179e-35
Identity = 89/239 (37.24%), Postives = 121/239 (50.63%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 962
            GNWK NG      +  + LN A                               V AQ+C  +  GA TG+++AEML N     +I+GHSERRA   E +  V  K   A   G+  I C+GET  QR++G T+ ++  Q        S   N+V+AYEPVWAIGTG   T    +++H  +R++L    S +  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:   11 GNWKMNGLKASAAEFDAMLNGAADVATKADLLVCPPATLIAAFADKARGKKVAVGAQDCHPKASGAHTGDIAAEMLANAGATAIIVGHSERRADHGEGDALVRQKAEAAWRAGVTAIVCIGETQAQRDAGQTLDILRGQLDGSLPDGSTAANLVVAYEPVWAIGTGLTPTVQDVEQIHGFIREFLTSRFSVD-GAKMRILYGGSVKPSNAAELMAVKNVNGALVGGASLKAADFLAIAK 248          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 89/247 (36.03%), Postives = 125/247 (50.61%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  V  +                        + +   S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE++++    V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPAVDLTAVLAAAKGSNLKVAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAS---TVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 88/244 (36.07%), Postives = 122/244 (50.00%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  +  +                        +++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 88/244 (36.07%), Postives = 122/244 (50.00%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  +  +                        +++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 88/244 (36.07%), Postives = 122/244 (50.00%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  +  +                        +++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 91/230 (39.57%), Postives = 120/230 (52.17%), Query Frame = -2
Query:  273 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 962
            GNWK NGT E + ++   L Q +                     ++    D  +  Q+C  +  GA TG++SA+ML +    +VI+GHSERRA   E +  V  K   A + GL  + C+GETLE+RE+G+T+ VV  Q           +N V+AYEPVWAIGTGKV T  Q  EVH  LR  L     A       ++YGGSV   N  E+    +VDG LVGGASLK
Sbjct:    8 GNWKMNGTGEHLAEL-ENLAQGDLPEGVDVLICPPATLISRAADRA---GDIAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTAENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVARFGA-AGKDLPLLYGGSVKPGNAAEIFGVSNVDGALVGGASLK 232          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = -2
Query:  243 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 797
            AQN +    GA+TGEVSA ML+++     I+GHSERR L  E+++ V  K   A+  GL  + CVGET E+R++G     V+ Q +A+ E +  ++   VV AYEP+WAIGTGK A+P  AQ+    +R  L++      A   R++YGGS+   N  E+ AQ DVDG LVGGASL+   F+ ++++A
Sbjct:   67 AQNFFYEDSGAYTGEVSAPMLLDVGARASIVGHSERRELFCETDESVARKARRAVEAGLLPVVCVGETEEERDAGRMWEKVSGQVRAVVEGLGDASGGRVVFAYEPIWAIGTGKTASPEDAQDAIGRIRGLLRELRGEGFAEEARLLYGGSIKPENISEIMAQKDVDGGLVGGASLEVGSFLQLVEAA 254          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 90/238 (37.82%), Postives = 124/238 (52.10%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVA-----AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK NG     +  V T+ +                        S L  +  +A     AQ+      GA+TGEV A ML  +   +VI+GHSERR +  E+++ V  K   AL  G+  + CVGET ++R SG    +V  Q  K ++       + ++AYEPVWAIGTGKVA+   AQ++H  +R  L +    +VA+   I+YGGSV   N  EL A PD+DG LVGGASL P+
Sbjct:    8 GNWKMNGNLASNQDWVKTVARGMESGMPAGRKFAVCPSFPYLSQCSTLIKEHSLAFLSLGAQDVSAHGAGAYTGEVGASMLKEMGCEYVIVGHSERRQMHQEADESVAAKALQALDSGMTPVICVGETADERNSGRAEEIVCSQVAKQVSVLQDRLADCLIAYEPVWAIGTGKVASAQVAQDMHRAIRMQLAE-FDEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLNPQ 244          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_HYPNA (Triosephosphate isomerase OS=Hyphomonas neptunium (strain ATCC 15444) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 86/241 (35.68%), Postives = 126/241 (52.28%), Query Frame = -2
Query:  243 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 962
            GNWK NG    + ++     +                            S   +  + C   + GA TG+++AEML +    +VI+GHSERRA   E++  V  + + AL  G+  I CVGETL+QR++G  + V+  Q      + +    +V+AYEPVWAIGTG+VAT  Q  EVH  +R  L      +   +TRI+YGGS+N  N  E+ A  +V+G L+GGASLK  +F+ I + A
Sbjct:    8 GNWKMNGLMANLAEVERVAAEVPASSEGAETLLCLPATLIHAGSAKSEGSGLKIGGETCHANEKGAHTGDLAAEMLKDAGASYVIVGHSERRADHGETDAVVAAQASAALRAGITPIICVGETLDQRDAGEVLTVITTQMAESIPEGAEAAAIVIAYEPVWAIGTGRVATSEQIAEVHTSIRNLLVRRF-GDAGRTTRILYGGSMNPGNAAEILAVAEVNGGLIGGASLKAADFLAIYRLA 247          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCHR6.263e-3536.84Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_BRAJA8.179e-3537.24Triosephosphate isomerase OS=Bradyrhizobium japoni... [more]
TPIS_STRGC1.068e-3436.03Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_STRA51.068e-3436.07Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA31.068e-3436.07Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA11.068e-3436.07Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_SILST1.068e-3439.57Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_RUBXD1.068e-3443.09Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]
TPIS_POLSQ1.068e-3437.82Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_HYPNA1.068e-3435.68Triosephosphate isomerase OS=Hyphomonas neptunium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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