CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.395e-34
Identity = 93/243 (38.27%), Postives = 127/243 (52.26%), Query Frame = -2
Query:  252 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLR-----SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 962
            GNWK + T  E ++ +  L  A                       +V+      SD  V AQN      GAFTGE+S  ML  L + +VI+GHSERR    E+++ V  ++A A   GL  I CVGE+ +QRE G T + +  Q     + I + +N+V+AYEP+WAIGTG+     +A  V   +R+ L +       A   I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:    8 GNWKMHKTQAEAREFLRELGLALRSSPSGSASQRQIILCVPFTDLAVVAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BRASO (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain ORS278) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.395e-34
Identity = 94/240 (39.17%), Postives = 126/240 (52.50%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTL-NQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 962
            GNWK NG      +  + L   AE                     K+       V AQ+C  +  GA TG++SAEML +     VI+GHSERRA   ES+  V  K   A   GL  I CVGET +QR++G T+ ++  Q      + S  DN+++AYEPVWAIGTG   T    +++H+ +R+ L      E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:   11 GNWKMNGLKASAAEFEAMLAGAAEVTGKADLLVCPPATLLAAFAEKTRGGKAVAVGAQDCHAKASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDVVVHQKAEAAWRAGLVAIVCVGETQQQRDAGLTLEILRGQLTLSLPEGSRADNLIVAYEPVWAIGTGLTPTAGDVEQIHSFIRQLLIVRFK-EQGARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.822e-34
Identity = 84/182 (46.15%), Postives = 108/182 (59.34%), Query Frame = -2
Query:  267 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 797
            AQ+      GA+TGE+S   L  L   + ++GHSERR    E+++ V  K   AL  GL  I C+GE LE RE+G+ V       +       AE+I+     V+AYEPVWAIGTG+VA+ A AQEV   +R  L +  SA+VAA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQ---TVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BORDL (Triosephosphate isomerase OS=Borrelia duttonii (strain Ly) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.822e-34
Identity = 84/188 (44.68%), Postives = 113/188 (60.11%), Query Frame = -2
Query:  252 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLK-VIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 803
            + AQN      GA T E++  ML+   + +VILGHSE R  L E+++ +  KV   L    K +I CVGETLE+RE G T+ VV  Q +     +  S+   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A +  I YGGSVN  N + L  + D+DG L+GGASLK + F+ II
Sbjct:   62 LGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGASLKADSFLKII 249          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_PROAC (Triosephosphate isomerase OS=Propionibacterium acnes GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.108e-34
Identity = 83/177 (46.89%), Postives = 106/177 (59.89%), Query Frame = -2
Query:  273 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 797
            AQ+      GA+TGEVS  ML  L   +V++GHSERR   NES++ V  K    +  G+  I C GE LE R++G  V     Q KA  + I       +V+AYEP+WAIGTG+ AT   AQEV   +R+ +K+   A  A + RI YGGSV  AN  E+ A+PDVDG LVGGASLK
Sbjct:   70 AQDISAHDDGAYTGEVSGAMLSKLGCRYVVVGHSERREYHNESDELVNAKAKKVIENGMTPIICCGEALEVRKAGKHVEHTVGQIKADLDGIPAEQVAKLVIAYEPIWAIGTGETATADDAQEVCQAIREAVKELYDAPTAEAVRIQYGGSVKPANVAEIMAKPDVDGALVGGASLK 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCVP (Triosephosphate isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.108e-34
Identity = 82/186 (44.09%), Postives = 107/186 (57.53%), Query Frame = -2
Query:  246 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 797
            AQ+      GA+TGE+S   L  L   + ++GHSERR   NE +  V  K A A   GL  I C+GE L+ RE+G+ V     Q +     +S       V+AYEPVWAIGTG+VA+ A AQEV   +R  L +  S E+AA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E   ++ +
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHNEDDALVAAKAAAAFKHGLTPIICIGEHLDVREAGNHVEYNVNQLRGSLAGLSAEQIGQAVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASPELAAGVRVLYGGSVNAKNVGEIVGQADVDGALVGGASLDGEQFSMLSA 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.108e-34
Identity = 89/236 (37.71%), Postives = 124/236 (52.54%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSV----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N T  E +  +   +                         S+    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V       +K+N   +    T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    7 GNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCG----MIKENFGKD----TTVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRAW (Triosephosphate isomerase OS=Streptomyces avermitilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.059e-34
Identity = 84/186 (45.16%), Postives = 110/186 (59.14%), Query Frame = -2
Query:  249 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 797
            AQ+      GA+TGE+S  ML  L   +V +GHSERR   +E+++ V  KV  +   GL  I CVGE LE RE+G+ V     Q +   + +     + +V+AYEPVWAIGTGKV     AQEV A +R  L +  S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I +
Sbjct:   69 AQDVSAHDSGAYTGEISGSMLAKLKCTYVAVGHSERRQYHHETDEIVNAKVKASFRHGLIPILCVGEELEVREAGNHVTHTLTQVEGGLKDVPAEQAETIVIAYEPVWAIGTGKVCGADDAQEVCAAIRAKLAELYSQELADQVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDADEFVKIAR 254          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BORRA (Triosephosphate isomerase OS=Borrelia recurrentis (strain A1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.059e-34
Identity = 83/188 (44.15%), Postives = 113/188 (60.11%), Query Frame = -2
Query:  252 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLK-VIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 803
            + AQN      GA T E++  ML+   + +VILGHSE R  L E+++ +  KV   L    K +I CVGETLE+RE G T+ VV  Q +     +  S+   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A +  I YGGSVN  N + L  + D+DG L+GG+SLK + F+ II
Sbjct:   62 LGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGSSLKADSFLKII 249          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_AMOA5 (Triosephosphate isomerase OS=Amoebophilus asiaticus (strain 5a2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.059e-34
Identity = 89/247 (36.03%), Postives = 129/247 (52.23%), Query Frame = -2
Query:  246 NWKCNGTSEE---VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI-----SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 959
            NWK N   +E   + K ++   QAE                             H+ AQNC  +  GAFTGEVSA ML ++ + +V++GHSERR    E ND +  K+   LS  L+ + C GE L  RES    A + +Q   IAE +          V++AYEP+WAIGTG + + A+ +E+   +R  LK   +  +A +  I+YGGS N +N  +L + P ++G L+GGASL   EFI I++S
Sbjct:    9 NWKMNKNFQEGLQLAKEITQFIQAEPLAGAQIILFPSFIHLEGISKLLTPEVKLHLGAQNCHDQIAGAFTGEVSAAMLASIDVRYVLVGHSERRQNFAEDNDLIAKKIDAILSCKLQPVFCCGEPLSVRESNQHYAFIEQQ---IAESLFHLTPDELQQVIIAYEPIWAIGTGLIPSLAEIEEMQQTIRNILKKQYNTVLADNMAILYGGSCNASNITKLISLPGINGVLIGGASLHFKEFIHILRS 252          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SYNJB1.395e-3438.27Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_BRASO1.395e-3439.17Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_MYCGI1.822e-3446.15Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]
TPIS_BORDL1.822e-3444.68Triosephosphate isomerase OS=Borrelia duttonii (st... [more]
TPIS_PROAC3.108e-3446.89Triosephosphate isomerase OS=Propionibacterium acn... [more]
TPIS_MYCVP3.108e-3444.09Triosephosphate isomerase OS=Mycobacterium vanbaal... [more]
TPIS_MYCH73.108e-3437.71Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_STRAW4.059e-3445.16Triosephosphate isomerase OS=Streptomyces avermiti... [more]
TPIS_BORRA4.059e-3444.15Triosephosphate isomerase OS=Borrelia recurrentis ... [more]
TPIS_AMOA54.059e-3436.03Triosephosphate isomerase OS=Amoebophilus asiaticu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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