CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.302e-34
Identity = 87/236 (36.86%), Postives = 123/236 (52.12%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSV----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N T  E +  +   +                         S+    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    7 GNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.302e-34
Identity = 87/236 (36.86%), Postives = 123/236 (52.12%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSV----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N T  E +  +   +                         S+    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    7 GNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.302e-34
Identity = 87/236 (36.86%), Postives = 123/236 (52.12%), Query Frame = -2
Query:  267 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSV----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 962
            GNWK N T  E +  +   +                         S+    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    7 GNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CHRVO (Triosephosphate isomerase OS=Chromobacterium violaceum GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.302e-34
Identity = 83/179 (46.37%), Postives = 111/179 (62.01%), Query Frame = -2
Query:  234 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 770
            GAFTGEVSA ML ++   + ++GHSERR    E N  +  K+  A++ G+  + CVGETL QRE+G  + VV EQ  AI   I++ + VV AYEPVWAIGTGKVA+  Q  E+HA ++ W   N     +A  R++YGGSV   N + + A  +VDG LVGGASL  +   +I  A  K
Sbjct:   72 GAFTGEVSAAMLADVGCRYALVGHSERRQYFREDNAALLAKMRNAIAAGVTPVLCVGETLAQREAGDYLNVVREQL-AILSDIADGEYVV-AYEPVWAIGTGKVASLEQIAEIHAFIKNWCLQNAGG--SAKIRVLYGGSVKAENAEAILATENVDGALVGGASLDADSFRVICQAAGK 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.924e-34
Identity = 76/190 (40.00%), Postives = 119/190 (62.63%), Query Frame = -2
Query:  243 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 803
            + AQN +    GAFTGE+S   LV+L + +V+LGHSERR L  E++  V  K+  AL   L  + C+GETLE +E+  T   + +Q     + +   D   +++AYEPVWAIGTGK A+P +A +   ++R+ + +  SA+V  S +I+YGGSV+  N + +  Q ++DG LVG ASL+  +F++  ++A
Sbjct:   64 IGAQNAFHESEGAFTGEISPLNLVSLGVKYVLLGHSERRVLFGETDQLVNLKLLKALQNNLSPVLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLETKDFLNFTQAA 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.043e-34
Identity = 89/247 (36.03%), Postives = 123/247 (49.80%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  V  +                        +     S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.043e-34
Identity = 89/247 (36.03%), Postives = 123/247 (49.80%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  V  +                        +     S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRPI (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.043e-34
Identity = 89/247 (36.03%), Postives = 123/247 (49.80%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  V  +                        +     S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRP4 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.043e-34
Identity = 89/247 (36.03%), Postives = 123/247 (49.80%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  V  +                        +     S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_STRP2 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.043e-34
Identity = 89/247 (36.03%), Postives = 123/247 (49.80%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 962
            GNWK N   EE K  V  +                        +     S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    9 GNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCHY5.302e-3436.86Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ5.302e-3436.86Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH25.302e-3436.86Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_CHRVO5.302e-3446.37Triosephosphate isomerase OS=Chromobacterium viola... [more]
TPIS_PHYAS6.924e-3440.00Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS_STRR69.043e-3436.03Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPN9.043e-3436.03Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPI9.043e-3436.03Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP49.043e-3436.03Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP29.043e-3436.03Triosephosphate isomerase OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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