CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.143e-51
Identity = 107/245 (43.67%), Postives = 151/245 (61.63%), Query Frame = -2
Query:  240 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAT 962
            GN+KCNG+ + +K  V+ +  A                     + +       +AAQN ++   GA+TGE S EML ++ +  VI+GHSERR ++ E+++    K   AL +G+ VI CVGETL++R++  T+ V   Q +A+ +++      W  VV+AYEPVW+IGTG VATP QA+EVH  LRKW  + V AE A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I   T
Sbjct:   10 GNFKCNGSLDFIKSHVAAI-AAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMIDILT 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.001e-50
Identity = 111/194 (57.22%), Postives = 133/194 (68.56%), Query Frame = -2
Query:  243 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 815
            S   +AAQNC+    GA+TGE+SA ML N    +VILGHSERR   NE+++ V  KV  ALS  L VI CVGETLEQRESG T +VV  Q +   + ++  D  +VV+AYEPVWAIGTGK ATP QAQEVHA +R  +KD    EVA   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSA
Sbjct:   58 SAIKLAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSA 251          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.451e-47
Identity = 110/242 (45.45%), Postives = 139/242 (57.44%), Query Frame = -2
Query:  243 GNWKCNGTSEEVKKIVSTL-NQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 962
            GNWK N T  E  ++ S + +Q                         +  +  H+AAQNC     GAFTGEVS  ML      +VI+GHSERR    ++N  V  KV  ALS GL VI CVGETL++RE G T  VV  Q K   E +++  ++V+AYEPVWAIGTGK A+  QAQEVHA +R  +    S   AA  RI YGGSV  +N +EL A PD+DG L+GGASL  E F+ I+K+A
Sbjct:    8 GNWKMNKTIAEAVELSSAIIDQLGEVSASCEVGIAPAFPALSGVHGVISGTGIHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGASLNAEDFVAIVKAA 249          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.451e-47
Identity = 108/242 (44.63%), Postives = 140/242 (57.85%), Query Frame = -2
Query:  243 GNWKCNGT-SEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 962
            GNWK N T +E ++   +   +                       K++  S   +AAQNC     GAFTGEVS  ML      +VILGHSERR L  E+N+ V  KV  AL++GL+VI CVGETL++RE+G T  +V  Q       +S+   +V+AYEPVWAIGTGK AT  QAQ+VHA +R  ++       A   RI YGGSV  +N  EL A PD+DG L+GGASLK E F+ II++A
Sbjct:    8 GNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLADVSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLKVEDFMAIIEAA 249          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.075e-46
Identity = 106/245 (43.27%), Postives = 140/245 (57.14%), Query Frame = -2
Query:  237 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATV 962
            GNWK + TS E   +V  L  A                     + ++ +SD  VAAQNC+    GAFTGEVS  +L +    +VI+GHSERR L  ES+ F+  KV   +  GL  I C+GETLE+RE+  T  V+  Q +   E +  +  + +V+AYEPVWAIGTGK AT +QAQ+ H+ +R  + D   ++VA   RI+YGGSV   N   L  QPD+DG LVGGASL  E FI I+K   V
Sbjct:    8 GNWKLHKTSAEAAALVGELKGALSDVVDRDIVVAPVFTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSVKPGNVDGLLQQPDIDGALVGGASLNAEDFIRIVKFKAV 252          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 184.882 bits (468), Expect = 6.038e-46
Identity = 104/240 (43.33%), Postives = 136/240 (56.67%), Query Frame = -2
Query:  249 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIK 962
            GNWK + T  E KK VS L                         + +   +  + AQN +    GAFTGE+S  ML  + + +VI+GHSERR +  E ++F+  KV   L +G+  I CVGETLE+RE G T  VV +Q +     +   +   VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +    E A S RI+YGGS+   N   L  Q D+DG LVGGASLK  FI++ +
Sbjct:  408 GNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELAR 647          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.030e-45
Identity = 105/241 (43.57%), Postives = 141/241 (58.51%), Query Frame = -2
Query:  243 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 962
            GNWK NG+ E  K ++  +  A+                      +V  S   + +QNC   + GA+TGEVSA+M  ++   WVILGHSERRAL  E+++ +  KV  A+  GL  I CVGETL  RESG    V  +Q  A+   +   D+ V+AYEPVWAIGTGK A+P  AQ +H  LR  ++ +   ++A   RI+YGGSV  +N KEL + PDVDG LVGGASL   EF+ II++A
Sbjct:    8 GNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFPYLQSVE-SAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRNNIRKHF-PQIADKIRILYGGSVKSSNAKELFSMPDVDGALVGGASLVSEEFVSIIEAA 246          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.345e-45
Identity = 109/247 (44.13%), Postives = 142/247 (57.49%), Query Frame = -2
Query:  240 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAT 962
            GNWK NGT++    + + +                        V+ V+  S   + AQN  V   GAFTGE+S EML ++   +VILGHSERR L  E+N+ V  KVA A   GL  I CVGETLEQRE+  T+ V+ +Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE HA +R  L   + A VA + RI+YGGS+   N KEL  Q DVDG L+GGA+LK  +F+ I+   T
Sbjct:    8 GNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKELLGQADVDGGLIGGAALKANDFLAIMDGLT 254          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.757e-45
Identity = 106/250 (42.40%), Postives = 143/250 (57.20%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++V+ L                         ++   S  H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVNELVANLRTELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.757e-45
Identity = 109/248 (43.95%), Postives = 145/248 (58.47%), Query Frame = -2
Query:  231 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVK---SVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 959
            NWK NG S  V  +VS L   E                     K   + L    HV +QN    + GA+TGEVS  ML NL+I +VI+GHSERR++  E++  V  KV  AL+ GL  I C+GE+  +R +G T  V++ Q + + ++  I  + +VV+AYEPVWAIGTGK A+ A AQE H  +RK+L    + +VA    ++YGGSVN ANC+EL AQ D+DG L+GGASLK E   II SA   K
Sbjct:   10 NWKMNGDSALVDTMVSGLADIELSSHVDVVICPSFPYLSELNQKIKAANLNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFLAQQ-NEQVADKVPLLYGGSVNAANCEELFAQTDIDGGLIGGASLKAEQFKIICSAAKGK 256          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPI1_GIALA2.143e-5143.67Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_CHLT39.001e-5057.22Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_PROA22.451e-4745.45Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLP82.451e-4744.63Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_PELCD2.075e-4643.27Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
PGKT_THEMA6.038e-4643.33Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_HAHCH1.030e-4543.57Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_MAGSM1.345e-4544.13Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_KLEPN1.757e-4542.40Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_COLP31.757e-4543.95Triosephosphate isomerase OS=Colwellia psychreryth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
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