CV884627

Overview
NameCV884627
Unique NameCV884627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:124..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.294e-45
Identity = 108/243 (44.44%), Postives = 142/243 (58.44%), Query Frame = -2
Query:  243 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 962
            GNWK NG+      +++ + +AE                    +  +  S   + AQ+      GA+TGEVS  ML+  +  +VI+GHSERRA   E+N+ V  K   ALS GL  I CVGETLEQRE+G T  VV  Q  A+   I+  D   +V+AYEPVWAIGTGK ATP  AQEVH  LR+ L    +A+ A   RI+YGGS+   N KEL A PD+DG L+GGA+LK  +F+ II++A
Sbjct:    8 GNWKMNGSLAANALLLAEI-KAEFGNPACDVAVCVPAPYLAQCLSLLSDSTIALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAK-NAQAATEVRILYGGSMKPDNAKELLAMPDIDGGLIGGAALKAADFLAIIRAA 248          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.294e-45
Identity = 108/241 (44.81%), Postives = 134/241 (55.60%), Query Frame = -2
Query:  243 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 962
            GNWK N T  E   + + +  A                     V  +  S   + AQNC     GAFTGEVSA M+       VI GHSERR    E+N  V  KV +ALS+GL+VI C GETLEQRE G T  VV  Q +     I +  N+V+AYEPVWAIGTGK AT  QA+EVH  +R  + D    E A   RI YGGSV  +N KEL + P++DG L+GGASL   +F+ I+K+A
Sbjct:    8 GNWKMNKTVTESLVLAAEVTAALGEGFTGCDVGIAPPFTALYEVGKLTGSRLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGLIGGASLNAADFVAIVKAA 248          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.997e-45
Identity = 102/232 (43.97%), Postives = 139/232 (59.91%), Query Frame = -2
Query:  273 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 962
            GNWK N T +E   +   LN+A                     V  ++  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:    8 GNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.997e-45
Identity = 102/232 (43.97%), Postives = 139/232 (59.91%), Query Frame = -2
Query:  273 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 962
            GNWK N T +E   +   LN+A                     V  ++  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:    8 GNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.719e-45
Identity = 106/244 (43.44%), Postives = 137/244 (56.15%), Query Frame = -2
Query:  240 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAT 962
            GNWK N    E  + ++++                        V+    S+  VAAQN      GAFTGEVS  ML +L +  V+LGHSERR L  E+N+ V  K   A +  L  I CVGETL+QRE+  T+ +V EQ K     ++N      ++AYEPVWAIGTGK AT  QA EV  E+RK + +  SA+VA    I YGGSV  AN  EL AQ D+DG LVGGASL PE F+ ++++ T
Sbjct:    8 GNWKMNKVLSEAGEFMNSVVPKAPKGNDVEAIVCAPFPFLSKLVEQAKGSEVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRKVVAEVTSADVAEKVIIQYGGSVKPANVDELLAQSDIDGALVGGASLDPESFLQLVEAGT 251          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.139e-44
Identity = 104/250 (41.60%), Postives = 144/250 (57.60%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.139e-44
Identity = 104/250 (41.60%), Postives = 144/250 (57.60%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.139e-44
Identity = 104/250 (41.60%), Postives = 144/250 (57.60%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.139e-44
Identity = 104/250 (41.60%), Postives = 144/250 (57.60%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CV884627 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.139e-44
Identity = 104/250 (41.60%), Postives = 144/250 (57.60%), Query Frame = -2
Query:  231 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXVKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 962
            GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:    8 GNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
The following BLAST results are available for this feature:
BLAST of CV884627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HERAR2.294e-4544.44Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_CHLPD2.294e-4544.81Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BACFR2.997e-4543.97Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN2.997e-4543.97Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_OCEIH8.719e-4543.44Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_SALTY1.139e-4441.60Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALSV1.139e-4441.60Triosephosphate isomerase OS=Salmonella schwarzeng... [more]
TPIS_SALPK1.139e-4441.60Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPB1.139e-4441.60Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPA1.139e-4441.60Triosephosphate isomerase OS=Salmonella paratyphi ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884627 ID=CV884627; Name=CV884627; organism=Citrus sinensis; type=EST; length=963bp
TTTTTTTTGAGAGGGAAAGCACCATTTATTAAATCCACAATGATAAGTTT
CAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTA
ACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATT
ACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCA
AGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACT
TGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAAT
CCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTAC
AGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACAT
TGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCA
GGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCCAA
CACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTT
CAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCT
CCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTT
ATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGAAT
GACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCACTA
ACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCAGC
AACATGGAAATCAGACCGCAACACACTCTTGACCAAAGGAAGAAACACAA
ACGGAGGGCTTACAACAACCTCCACAACATCCTCAGAAGGAACTTCAGCT
TGATTCAATGTAGAAACAATCTTCTTCACTTCCTCAGATGTCCCATTGCA
TTTCCAGTTGCCG
back to top