CV884626

Overview
NameCV884626
Unique NameCV884626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBT (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tpiA PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.499e-38
Identity = 101/258 (39.15%), Postives = 142/258 (55.04%), Query Frame = 2
Query:   83 FVGGNWKCNGTS-------EEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 823
            +V GNWK N          EE K+++     A+                     +   R+ + VA     V   GA+TGEVSAE+L +  I +V++GHSERR +  ++ + +  K+  AL+ G+ VI CVGE+LEQRE G    VV +Q   IA  ++   W N VV+AYEP+WAIGTGK A+P  AQ +HA++R+ L     A   ++  I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++    K
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTPA--GSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQAFAQSK 264          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBS (Triosephosphate isomerase OS=Acinetobacter baumannii (strain SDF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.499e-38
Identity = 101/258 (39.15%), Postives = 142/258 (55.04%), Query Frame = 2
Query:   83 FVGGNWKCNGTS-------EEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 823
            +V GNWK N          EE K+++     A+                     +   R+ + VA     V   GA+TGEVSAE+L +  I +V++GHSERR +  ++ + +  K+  AL+ G+ VI CVGE+LEQRE G    VV +Q   IA  ++   W N VV+AYEP+WAIGTGK A+P  AQ +HA++R+ L     A   ++  I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++    K
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTPA--GSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQAFAQSK 264          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBC (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ACICU) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.499e-38
Identity = 101/258 (39.15%), Postives = 142/258 (55.04%), Query Frame = 2
Query:   83 FVGGNWKCNGTS-------EEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 823
            +V GNWK N          EE K+++     A+                     +   R+ + VA     V   GA+TGEVSAE+L +  I +V++GHSERR +  ++ + +  K+  AL+ G+ VI CVGE+LEQRE G    VV +Q   IA  ++   W N VV+AYEP+WAIGTGK A+P  AQ +HA++R+ L     A   ++  I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++    K
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTPA--GSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQAFAQSK 264          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_VIBPA (Triosephosphate isomerase OS=Vibrio parahaemolyticus GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.241e-37
Identity = 97/256 (37.89%), Postives = 137/256 (53.52%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFH---VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 823
            R+  V GNWK NG+   V ++++ LN AE                     + ++    +   + AQN  +   GAFTG++S EML +     +I+GHSERR   NES++F+  K  +    GL  + C+GE+  Q E+G T AV A Q  A+ +   +   +  ++AYEP+WAIGTGK AT   AQ +HA +R  +     A VAA   I YGGSV   N +   +QPD+DG LVGGASL  + F  I K+A   K
Sbjct:    2 RRPVVMGNWKLNGSKAMVTELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDLNNSGAFTGDMSPEMLKDFGATHIIIGHSERREYHNESDEFIAKKFNFLKENGLTPVFCIGESEAQNEAGETEAVCARQINAVIDTYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRALIAAKDEA-VAAQVIIQYGGSVKPENAEAYFSQPDIDGALVGGASLDAKSFAAIAKAAAAAK 255          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_TREPS (Triosephosphate isomerase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.241e-37
Identity = 97/248 (39.11%), Postives = 134/248 (54.03%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 808
            R +F+ GNWK + T  E   +   L + E                     K +  S+  + AQ+    + GA TGEVS   L +L +  VI+GHSERR    E++  +  KV   L  GL+VI CVGE L++ E+G T  VV  Q +A    +  S   NV +AYEPVWAIGTGK ATPAQA  VHA +R  +++   A +A +  I YGGS+   N + L A+  +DG L+GGASL+   F+ I +S
Sbjct:    2 RGYFIAGNWKMHKTCAEAVALAQELVR-ELRGGPHTYMIAPSFTALDAVGKVLRGSNVLLGAQDVSSEEWGAHTGEVSVLQLEDLGVQVVIVGHSERRHGRGENDKLINQKVRRVLESGLRVILCVGERLQEYEAGCTNEVVGTQVRAGMADVCGSLMHNVTVAYEPVWAIGTGKTATPAQANAVHAHIRSVVREMYGAAIAEALCIQYGGSMKAENARALLAEEHIDGGLIGGASLEAASFVPIARS 248          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_TREPA (Triosephosphate isomerase OS=Treponema pallidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.241e-37
Identity = 97/248 (39.11%), Postives = 134/248 (54.03%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 808
            R +F+ GNWK + T  E   +   L + E                     K +  S+  + AQ+    + GA TGEVS   L +L +  VI+GHSERR    E++  +  KV   L  GL+VI CVGE L++ E+G T  VV  Q +A    +  S   NV +AYEPVWAIGTGK ATPAQA  VHA +R  +++   A +A +  I YGGS+   N + L A+  +DG L+GGASL+   F+ I +S
Sbjct:    2 RGYFIAGNWKMHKTCAEAVALAQELVR-ELRGGPHTYMIAPSFTALDAVGKVLRGSNVLLGAQDVSSEEWGAHTGEVSVLQLEDLGVQVVIVGHSERRHGRGENDKLINQKVRRVLESGLRVILCVGERLQEYEAGCTNEVVGTQVRAGMADVCGSLMHNVTVAYEPVWAIGTGKTATPAQANAVHAHIRSVVREMYGAAIAEALCIQYGGSMKAENARALLAEEHIDGGLIGGASLEAASFVPIARS 248          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.241e-37
Identity = 95/247 (38.46%), Postives = 139/247 (56.28%), Query Frame = 2
Query:   77 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 808
            K ++ GNWK   T++EVK+  S LNQ +                       + R++  V AQ+       A TG VS E L ++ + +VI+GHSERR L +ES++ +  KV   L   ++ I C+GETLE+ E+  T AV+ +Q +   + I +    ++++AYEPVWAIGTGK A+   AQ+  A +R  L    S  +A    I+YGGSV   N  EL AQ D++G LVGGASL P +FI +I++
Sbjct:    5 KRYIFGNWKTYKTTQEVKEFFSVLNQTKLTKNPDVVFGVAPVFVHLGLANQLERNECLVLAQDANYVMNKANTGTVSYEQLKDIGVNYVIIGHSERRKLFHESDELINQKVKTLLENKMRPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRP6 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M6 GN=tpiA PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.620e-37
Identity = 91/240 (37.92%), Postives = 124/240 (51.67%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            M+RK  + GNWK N   +E +  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+
Sbjct:    1 MSRKPIIAGNWKMNKNPQEARAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLE 240          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.620e-37
Identity = 94/240 (39.17%), Postives = 126/240 (52.50%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            R   + GNWK N T +E  ++V  L                         + V  S+  V AQN    + GA+TGE++ +ML  L + +VI+GHSERR   NE+++ V  KV  A    L  I C GE+LE+RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPL-VKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_CLOAB (Triosephosphate isomerase OS=Clostridium acetobutylicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.620e-37
Identity = 95/234 (40.60%), Postives = 122/234 (52.14%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            + GNWK N T  E  K++  L                          +   S+  VAAQN    + GAFTGE+S + L  L + +VILGHSERR   NE++  +  KV  A +  +  I C GETLE+RE+  T  V  +Q K     +S      VV+AYEP+WAIGTGK AT  QA E    +RK ++     EVA   RI YGGSV     K   A+P++DG LVGGASLK
Sbjct:    6 IAGNWKMNNTISESLKLIEELKPL-VKDAKAEVVVAPTAVSLETVVNATKGSNIKVAAQNAHFEESGAFTGEISLKALEELGVSYVILGHSERRQYFNETDCALNKKVKAAFAHNITPILCCGETLEEREANVTNEVTGKQIKLDLAGLSAEQAAKVVIAYEPIWAIGTGKTATDEQANETIGAIRKTVEVMFGKEVAEKVRIQYGGSVKPNTIKAQMAKPEIDGALVGGASLK 238          
The following BLAST results are available for this feature:
BLAST of CV884626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACIBT9.499e-3839.15Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIBS9.499e-3839.15Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIBC9.499e-3839.15Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_VIBPA1.241e-3737.89Triosephosphate isomerase OS=Vibrio parahaemolytic... [more]
TPIS_TREPS1.241e-3739.11Triosephosphate isomerase OS=Treponema pallidum su... [more]
TPIS_TREPA1.241e-3739.11Triosephosphate isomerase OS=Treponema pallidum GN... [more]
TPIS_MYCGA1.241e-3738.46Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS_STRP61.620e-3737.92Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_CLOBL1.620e-3739.17Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOAB1.620e-3740.60Triosephosphate isomerase OS=Clostridium acetobuty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884626 ID=CV884626; Name=CV884626; organism=Citrus sinensis; type=EST; length=909bp
AGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAAC
AAAATCCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGG
AAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAA
TCAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTC
CGTTTGTGTTTCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCAT
GTTGCTGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGA
AGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTG
GTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGA
GATAAAGTTGCTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGT
TGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGG
CTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTT
GTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAAC
CCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAG
ACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGT
TCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGA
TGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTA
TCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCTACTCG
GCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACTAGCGT
TGTAATTTT
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