CV884626

Overview
NameCV884626
Unique NameCV884626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.116e-37
Identity = 91/240 (37.92%), Postives = 124/240 (51.67%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            RK  + GNWK N   E+  ++V  L                         KSV  ++  V AQN    + GA+TGE+S  ML +L + +VI+GHSERR   NE ++ +  K+  A    +  I C GE+L +RE+G T  V+  Q K   + +     + +V+AYEP+WAIGTGK AT  QA +  A +R  +        A   RI YGGSV  A  K    QP +DG LVGGASLKP+
Sbjct:    2 RKAIIAGNWKMNKNLEDALELVEELKPL-VRGAKCDVVLCPPYVCLDAVVKSVGGTNIKVGAQNMHYEESGAYTGEISPGMLKSLKVDYVIIGHSERRQYFNEKDETINKKIKKAFEHDIIPIVCCGESLLERENGITEEVLGRQIKLALKDLRKEQVEKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQ 240          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_RHOPB (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisB18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.764e-37
Identity = 95/238 (39.92%), Postives = 125/238 (52.52%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR------SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            + GNWK NG    + ++   L  A                      + +        + F + AQ+C  R  GA TG++SAEML +     VI+GHSERRA   ES+  V +K   A   GL  I CVGET  QR++G T+ VV  Q        +   N V+AYEPVWAIGTG+  T A  ++VH  +RK L   +S E  +  RI+YGGSV  +N +EL A  DV+G LVGGASLK
Sbjct:    9 IAGNWKMNGLRASLSELKLMLEGAGKLSATADLLICPPATLVAAFAQKLAADTGSRSNSFAIGAQDCHPRASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDALVREKAEAAWRAGLVAIICVGETQGQRDAGQTLDVVGTQLAGSLPDGATAANTVVAYEPVWAIGTGRTPTVADVEQVHGFIRKSLTQRMSGE-GSKVRILYGGSVKPSNAQELMAVADVNGALVGGASLK 245          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_LACSS (Triosephosphate isomerase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.764e-37
Identity = 88/246 (35.77%), Postives = 132/246 (53.66%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 802
            RK  + GNWK N    +  + V+ +                         ++   +D  VAA+NC+  + GAFTGE S + L  + + +VI+GHSERR   +E+++ +  K        +  I C GE+LE RE+G     V+ Q     + +S     ++V+AYEP+WAIGTGK A+  QAQE+ A +R+ +       VA   RI YGGSV  AN KE+  + D+DG LVGGAS++P  F+D++
Sbjct:    2 RKPIIAGNWKMNMNPTQTTEFVNAIKANLPKFDQTESVIGAPAVDLPALLEAAKGTDLKVAAENCYFEEAGAFTGETSPKTLNEMGVDYVIIGHSERRDYFHETDEDINKKAHAIFKNNMTPIFCCGESLETREAGKAEEWVSNQVTEGLKGLSADQVSSMVIAYEPIWAIGTGKTASADQAQEICAVVRQTVAKLYDQTVADKVRIQYGGSVKPANVKEIMGKEDIDGGLVGGASMEPASFLDLV 247          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_FRATM (Triosephosphate isomerase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.764e-37
Identity = 93/242 (38.43%), Postives = 135/242 (55.79%), Query Frame = 2
Query:   95 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 811
            NWK NG S  +K++ S ++Q +                      S L     V  QN      GA+TGE+SA ML ++   ++++GHSERR+L  ES++ V  K+   +   +  + C+GE+L+ R+SG    V+A Q   I E +S      VV+AYEPVWAIGTG VA+  Q QE H  +R  L   V  ++A + +I+YGGS+   N K++ + P+VDG L+GGASLK  EF +II  A
Sbjct:    8 NWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVI-SQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLA-KVDEKLAKNIKIVYGGSLKAENAKDILSLPNVDGGLIGGASLKAVEFNEIINQA 247          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_ACIF2 (Triosephosphate isomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.764e-37
Identity = 95/250 (38.00%), Postives = 133/250 (53.20%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI---SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 811
            R   V GNWK NG S +   +   +  A                      +    S      QN +    GA+TGE+S  ML ++   +V++GHSERR +  ES+  +  K+  AL  GL  + CVGET  +R  G T AV+  Q +A+   +   ++  N+++AYEPVWAIGTG  A+P QAQ VH  +R+ L    SA++A    ++YGGSV G N   L  Q D+DG LVGGASL+  EFI I ++A
Sbjct:    2 RPTMVAGNWKMNGLSGDAVHLTQAILHAGLEPMRPEVVIFPPFTLLHAVSQEAKSSALRWGGQNLFWEASGAYTGEISGAMLRDMGCRYVLIGHSERRQIFAESDAQIVQKIKAALLSGLIPVVCVGETEAERAQGLTDAVLRRQLEAVLPLLNLEASQPNLIIAYEPVWAIGTGLSASPEQAQAVHVFIRE-LAAAYSAQLARRLLLLYGGSVKGNNAAALFDQADIDGALVGGASLQAGEFIQICRAA 250          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 93/255 (36.47%), Postives = 130/255 (50.98%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 805
            M+RK F+ GNWK N   EE K  V  +                          +   S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE++++    V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPAVDLTAVLAAAKGSNLKVAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAS---TVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 92/252 (36.51%), Postives = 127/252 (50.40%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 805
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 92/252 (36.51%), Postives = 127/252 (50.40%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 805
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 92/252 (36.51%), Postives = 127/252 (50.40%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 805
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMS (Triosephosphate isomerase OS=Mycoplasma mycoides subsp. mycoides SC GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 90/237 (37.97%), Postives = 124/237 (52.32%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV--VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 778
            +K  + GNWK NGT+E    +   LNQ +                        L  +  +AAQN   +  GA+TGE+S  ML  + + +VI+GHSERR + NE++  V  K    L   +  I C GETL+ +ESG T+  V  Q   + E I   D +  ++AYEP+WAIGTGK AT + A+EV  ++R  L        A    I YGGSV  +N +E    P++DG LVGGASL
Sbjct:    2 KKKVIFGNWKMNGTNES---LTDFLNQVDNKIDSSKIIAGLAVPYVMLQTGLKLAKNVKIAAQNVHYKDKGAYTGEISTTMLKEVGVEYVIIGHSERREMFNETDLDVNKKAKVLLENNITPIICCGETLQTKESGKTIEFVNNQINIMFEGIKKEDAIKAIIAYEPIWAIGTGKTATSSDAEEVCKQIRNNLSKIYDKNTAEQIIIQYGGSVKPSNIQEYLKMPNIDGALVGGASL 235          
The following BLAST results are available for this feature:
BLAST of CV884626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOK52.116e-3737.92Triosephosphate isomerase OS=Clostridium kluyveri ... [more]
TPIS_RHOPB2.764e-3739.92Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_LACSS2.764e-3735.77Triosephosphate isomerase OS=Lactobacillus sakei s... [more]
TPIS_FRATM2.764e-3738.43Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_ACIF22.764e-3738.00Triosephosphate isomerase OS=Acidithiobacillus fer... [more]
TPIS_STRGC3.610e-3736.47Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_STRA53.610e-3736.51Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA33.610e-3736.51Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA13.610e-3736.51Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_MYCMS3.610e-3737.97Triosephosphate isomerase OS=Mycoplasma mycoides s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884626 ID=CV884626; Name=CV884626; organism=Citrus sinensis; type=EST; length=909bp
AGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAAC
AAAATCCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGG
AAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAA
TCAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTC
CGTTTGTGTTTCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCAT
GTTGCTGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGA
AGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTG
GTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGA
GATAAAGTTGCTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGT
TGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGG
CTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTT
GTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAAC
CCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAG
ACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGT
TCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGA
TGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTA
TCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCTACTCG
GCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACTAGCGT
TGTAATTTT
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