CV884626

Overview
NameCV884626
Unique NameCV884626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_BDEBA (Triosephosphate isomerase OS=Bdellovibrio bacteriovorus GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 88/195 (45.13%), Postives = 116/195 (59.49%), Query Frame = 2
Query:  224 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 808
            +S+  +     AQNC+ +  GAFTGE SA+++ +L   +V++GHSERRA+  E +  V DKVA+    GL  + C+GETL++RES  T  V+  Q      K      VV+AYEPVWAIGTGKVATP Q  E H ++   LK    A    +  I+YGGSV   N   L  QP V+GFLVGGASL+ +    I S
Sbjct:   50 ESLKGTSIKFGAQNCYFQAQGAFTGENSAQVVKDLGGSYVLIGHSERRAIFGEGDALVADKVAFVQGLGLTPMLCIGETLQERESAKTFRVLETQLNLGLAKADKTKPVVVAYEPVWAIGTGKVATPEQVAETHTDVFNILK----ALGFETAPILYGGSVKPDNAAGLIKQPHVNGFLVGGASLEAKSFSEIAS 240          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_XANP2 (Triosephosphate isomerase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.714e-37
Identity = 97/252 (38.49%), Postives = 127/252 (50.40%), Query Frame = 2
Query:   71 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVK 820
            +R+  + GNWK NG    + +I +     +                        L  S   +  QNC     GA TG +SAEML +  +  VI+GHSERR  L+ES+  V  KV  A   GL  I CVGET E+R++G  V VV  Q      +     N+V+AYEPVWAIGTG+  TP     +H  +R  L+    AE A   RI+YGGSV   N   L A  DVDG LVGGASLK  +F+ I ++   +
Sbjct:    4 SRRVLIAGNWKMNGLKSSLAEIEALAAGYDGDLKAKLDLLVCPPATLLISAAERLAGSGVQLGGQNCHPAPAGAHTGGISAEMLKDAGVTSVIVGHSERRTNLSESDAVVMAKVKAAWCFGLLPIVCVGETAEERDAGEAVGVVTRQVHQSLPEGCTASNLVIAYEPVWAIGTGRTPTPEDVANIHGTIRSVLRSQFGAE-ADGIRILYGGSVKPDNAATLMAVADVDGALVGGASLKAADFLAIARATPAR 254          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_THET8 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tpiA PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.714e-37
Identity = 97/250 (38.80%), Postives = 132/250 (52.80%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 811
            R+  V GNWK + T  E +   + L +                       K VL  +     AQ+    K GA+TGEVSA ML +L   + I+GHSERR    E++  V +K    L +G+  I CVGE LE RE G  V     Q +   E +     + +V+AYEPVWAIGTGK ATP  A+ +H  +RK L +      A+  RI+YGGSVN  N  +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct:    2 RRVLVAGNWKMHKTPSEARVWFAELKRL--LPPLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA9 (Triosephosphate isomerase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.714e-37
Identity = 99/246 (40.24%), Postives = 125/246 (50.81%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            M+RK  + GNWK N    E    V+KI  +L                             +      AQ+  V   GA+TGEVS   L  L + +V++GHSERR    E +  V  K A AL  GL  I C+GE L+ RE+G  V       +     +S      VV+AYEPVWAIGTG+VA+ A AQEV A +R  L    +A+VA S R++YGGS N  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDIRSVQTLVDGDKLRLTYGAQDLSVYDSGAYTGEVSGAFLAKLGVTYVVVGHSERRQYHGEDDALVAAKAAAALKHGLTPIVCIGEALDIREAGDHVQYNVNSLRGSLAGLSAEQVGKVVIAYEPVWAIGTGRVASAADAQEVCAAIRAELAQIANADVAGSVRVLYGGSANAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.714e-37
Identity = 93/238 (39.08%), Postives = 125/238 (52.52%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            R   + GNWK N T +E  ++V  L                         + V  S+  V AQN    + GA+TGE++ +ML  L + +VI+GHSERR   NE+++ V  KV  A    L  I C GE+LE+RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPL-VKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLK 238          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.157e-37
Identity = 91/248 (36.69%), Postives = 131/248 (52.82%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 808
            RK  + GNWK + T +E  + V  +                         ++   ++  + AQN      GAFTGE+S   L +L + +VI+GHSERR +  E+++ V  KV  A   GL  I C GETLE+RES  T  VV  Q +   E ++      VV+AYEP+WAIGTGK +T   A  V   +R+ + +  S E A + RI YGGSV   N     A+  +DG LVGGASL+P+ F+ ++++
Sbjct:    2 RKPIIAGNWKMHKTLKEALQFVEEVKHEVPSNEQVDAVVCAPALFLAHLVEATKGTNVKIGAQNMHFEDQGAFTGEISPVALKDLGVEYVIIGHSERREMFAETDETVNKKVLAAFKHGLVPIVCCGETLEERESNRTNEVVRVQVEKALEGLTEEQVKQVVIAYEPIWAIGTGKSSTAEDANNVCGYIRQVIANKFSQEAANAVRIQYGGSVKPENIAAFLAEEHIDGALVGGASLQPQSFLQLVEA 249          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_DESDG (Triosephosphate isomerase OS=Desulfovibrio desulfuricans (strain G20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.041e-37
Identity = 85/187 (45.45%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  245 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW------DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            F+  AQN +    GA+TGE+S  M+V+    W + GHSERR++L ES+ FVG K A+ L +GL V+ C+GETLE+RE G    V+  Q   ++E +S        + + +AYEPVWAIGTGKVA  A+    HA +R  L++ + A  A S RI+YGGSV   N   + +  +VDG LVGGASL+ E
Sbjct:   60 FYCGAQNVYPADEGAYTGEISPGMIVSTGAAWALTGHSERRSVLGESSAFVGQKTAFCLEKGLNVVLCIGETLEEREGGQLEKVLRGQ---LSEGLSGVPAGIAPERLAIAYEPVWAIGTGKVAGTAEIAATHAVVRGMLRELLPA-AADSMRILYGGSVKPDNAAAIISLDNVDGVLVGGASLQAE 242          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_RALSO (Triosephosphate isomerase OS=Ralstonia solanacearum GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.050e-36
Identity = 103/242 (42.56%), Postives = 128/242 (52.89%), Query Frame = 2
Query:   71 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            AR   V GNWK +G+     +++  +  A                      +SVL  S     AQ+      GAFTGEV+A ML      + I+GHSERR    E++  V  K   AL  G+  I CVGETL QRE+G T  VVA Q +A+ E +S     ++V+AYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL    D+DG L+GGASLK E
Sbjct:    3 ARPKLVVGNWKLHGSLNGNAELLEKIKAA---GQTRAALAVCAPFPYLAQCQSVLAGSSVAWGAQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHGITPIVCVGETLAQREAGETELVVARQLEAVLESLSVEQLGHIVVAYEPVWAIGTGKTATSEQAQAVHAFLRGRVA-ACDAGVAQRMPILYGGSVKPDNAAELFTMADIDGGLIGGASLKAE 240          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_HERA2 (Triosephosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.050e-36
Identity = 89/188 (47.34%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  251 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 805
            + AQN      GA+TGE++ +ML  L   +VILGHSERR    E++  +  K   AL+ GLK I CVGE   +R+SG   +VV  Q +     +S      VV+AYEPVWAIGTG  ATPA AQ +HA +R  L        A +  I YGGSV   N  EL AQPD+DG LVGGASLK  +FI I++
Sbjct:   61 LGAQNMHYEAKGAYTGEIAPQMLKELGCSYVILGHSERRQYFGETDALINRKAHAALANGLKPIVCVGEVKAERDSGQAESVVVGQLRGSLAGLSAEQLRGVVIAYEPVWAIGTGDTATPADAQAMHARIRAELAALSDQATADAVIIQYGGSVKPDNVDELMAQPDIDGALVGGASLKAADFIRIVR 248          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_CUPTR (Triosephosphate isomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.050e-36
Identity = 90/179 (50.28%), Postives = 108/179 (60.34%), Query Frame = 2
Query:  257 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            AQ+      GAFTGEV+A ML      +V++GHSERR    E++  V  K   AL  G+  + CVGETL QRE+G T AVV  Q +A+ E   +     VVLAYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   62 AQDVSAEARGAFTGEVAASMLGEFGCTYVLVGHSERRTYHGETDQAVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLEALTVEQLGRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAAR-DAGVAGRMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLKSE 239          
The following BLAST results are available for this feature:
BLAST of CV884626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BDEBA3.610e-3745.13Triosephosphate isomerase OS=Bdellovibrio bacterio... [more]
TPIS_XANP24.714e-3738.49Triosephosphate isomerase OS=Xanthobacter autotrop... [more]
TPIS_THET84.714e-3738.80Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_MYCA94.714e-3740.24Triosephosphate isomerase OS=Mycobacterium abscess... [more]
TPIS_CLOBK4.714e-3739.08Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_ANOFW6.157e-3736.69Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_DESDG8.041e-3745.45Triosephosphate isomerase OS=Desulfovibrio desulfu... [more]
TPIS_RALSO1.050e-3642.56Triosephosphate isomerase OS=Ralstonia solanacearu... [more]
TPIS_HERA21.050e-3647.34Triosephosphate isomerase OS=Herpetosiphon auranti... [more]
TPIS_CUPTR1.050e-3650.28Triosephosphate isomerase OS=Cupriavidus taiwanens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884626 ID=CV884626; Name=CV884626; organism=Citrus sinensis; type=EST; length=909bp
AGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAAC
AAAATCCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGG
AAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAA
TCAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTC
CGTTTGTGTTTCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCAT
GTTGCTGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGA
AGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTG
GTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGA
GATAAAGTTGCTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGT
TGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGG
CTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTT
GTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAAC
CCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAG
ACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGT
TCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGA
TGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTA
TCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCTACTCG
GCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACTAGCGT
TGTAATTTT
back to top