CV884626

Overview
NameCV884626
Unique NameCV884626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.050e-36
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 2
Query:  284 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            GA+TGE+SAE+L +  I +V++GHSERR LL +  + +  K+++AL+ G+ VI CVGE+LEQRE G    +V +Q   IA  +S   W + +V+AYEP+WAIGTG+ A+P  AQ +HA++R+ L     A   +   ++YGGSV   N  ELAA PD++G LVGGASL  E
Sbjct:   83 GAYTGEISAELLTDSQIRYVLIGHSERRDLLGDHVEILKAKLSHALNAGMTVIYCVGESLEQREQGLAEQIVLQQICDIAPVVSAEQWQHQIVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQITPA--GSQIALLYGGSVKPENAVELAACPDINGALVGGASLNAE 251          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_VIBCH (Triosephosphate isomerase OS=Vibrio cholerae GN=tpiA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.372e-36
Identity = 98/256 (38.28%), Postives = 133/256 (51.95%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFH---VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 823
            R+  V GNWK NG+   V  +++ LN AE                     + +++   +   + AQN      GA+TG++S  ML +     +I+GHSERR    ES++FV  K A+    GL  + C+GET  Q E+G T AV A Q  A+  A  +   +  ++AYEP+WAIGTGK AT   AQ +HA +R  +     A VA    I YGGSV   N     AQPD+DG LVGGASL  + F  I K+A   K
Sbjct:    2 RRPVVMGNWKLNGSKAMVTDLLNGLN-AELEGVEGVDVVVAPPAMYLDLAERLIKEGGNKLILGAQNTDTHNSGAYTGDMSPAMLKDFGASHIIIGHSERRDYHKESDEFVAKKFAFLKENGLTPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAIGTGKAATADDAQRIHASIRALIAAK-DAAVAEQVIIQYGGSVKPENAASYFAQPDIDGALVGGASLDAKGFAAIAKAAAEAK 255          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_FRAP2 (Triosephosphate isomerase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.372e-36
Identity = 90/243 (37.04%), Postives = 132/243 (54.32%), Query Frame = 2
Query:   92 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 811
            GNWK NG+S  +K++   +++                          L  +  V  QN      GA+TGE+SAEML ++   ++++GHSERR+L  E++  V  K+   +   +  + C+GE+LE R+ G    V+  Q   I E +S      V++AYEPVWAIGTG VA+  Q QE H  +R  L   V   +A + +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:    7 GNWKMNGSSASIKELCKGISEVNYNSEKVAVAVFPSSVYVKEVLAQ-LPKEIGVGLQNITFYDNGAYTGELSAEMLHDVGCNYLLIGHSERRSLFGETDQDVFKKLNKIIDTSVVPVVCIGESLEDRQGGRLEKVLTTQLSLILENLSIEQLARVIIAYEPVWAIGTGVVASLEQVQETHQFIRS-LVAKVDENLAKNMKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKASEFNEIINQA 247          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCS5 (Triosephosphate isomerase OS=Mycoplasma synoviae (strain 53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.791e-36
Identity = 98/246 (39.84%), Postives = 138/246 (56.10%), Query Frame = 2
Query:   77 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 802
            K  + GNWK N T    K+ +                             + L+ +     +AAQN    + GA+TGEVSA+ML++L++ +VILGHSE+R    E+++ V  K   AL + L  I CVGETLE+  +G T  VV  Q  A  + + +   V++AYEP+WAIGTGKVAT   AQ+V     K++K+  S +    T + YGGSVN  N  EL++Q D+DGFLVGGASLK  +F D++
Sbjct:    3 KKLIVGNWKMNSTFSTTKEFLKEFQSLYSLNSKTYNQKATFAVATPFTNLAALKDNDLNLKLAAQNMSFYEKGAYTGEVSADMLLDLNVSYVILGHSEQRQYHAETDENVNKKARLALEKNLTPIVCVGETLEEYLAGKTKEVVKAQLAASLKDL-DVTKVIVAYEPIWAIGTGKVATAQIAQDV----CKYIKELTSKQ----TVVQYGGSVNAKNIFELSSQEDIDGFLVGGASLKATDFSDLM 239          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_LEIXX (Triosephosphate isomerase OS=Leifsonia xyli subsp. xyli GN=tpiA PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.791e-36
Identity = 99/253 (39.13%), Postives = 130/253 (51.38%), Query Frame = 2
Query:   68 MARKFFVGGNWKCN----GTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 805
            M R   + GNWK N     +   V+K+  TL  A                        V      +A   Q+      GA+TGE++A  L  L   +VI+GHSERR L NE+++ V  K A A+  G+  I CVGET E  E     AV   Q +A    I +  + V+AYEPVWAIG+G+ ATP QA++V A LR  + + +  EVAA TRI+YGGSV   N      + +VDG LVGGASL   EF  II+
Sbjct:    1 MRRVPLIAGNWKMNLDHLQSIAVVQKLAWTLKDAGHDFGAVEVAVFPPFTDLRSVQTLVAADKLPIAFGGQDVSEHDSGAYTGEIAASFLAALEARYVIIGHSERRTLHNETDEQVAAKTAQAVKNGISPIVCVGETAEDLEKHGASAVPVAQLRAALAGIDSAADFVVAYEPVWAIGSGQAATPEQAEQVAAALRAVIAEALGDEVAAKTRILYGGSVKSGNIAGFMRETNVDGALVGGASLDVAEFAAIIR 253          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.791e-36
Identity = 93/240 (38.75%), Postives = 125/240 (52.08%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            R   + GNWK N T +E  ++V  L                         + V  S+  V AQN    + GA+TGE++ +ML  L + +VI+GHSERR   NE+++ V  KV  A    L  I C GE+LE+RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +K      VA   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPL-VKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.340e-36
Identity = 91/246 (36.99%), Postives = 128/246 (52.03%), Query Frame = 2
Query:   77 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 802
            K  +  NWK N    E K ++  L                         K  L+ S   + AQN +    GAFTGE+S EML ++   WV++GHSERR ++ E    +  K   ALS G  +I C+GET ++RE+G   +V+ +Q +     I +     +V+AYEPVWAIGTGKVA+       H  +RK L  N+    + + RI+YGGSVN  N   +    +V+G LVGGASL+ E F+ II
Sbjct:    2 KILIAANWKMNKNRLEAKDMIEKLMSMPEGIPPQRDIVLFPPFLAIDTIKEKLKNSTIVIGAQNFYPAPSGAFTGEISLEMLKDVGCSWVLIGHSERRHIIGELPTLIEQKTKLALSYGFSIILCIGETAQEREAGLVNSVLEQQLRTSLTDIPSKAISQLVIAYEPVWAIGTGKVASQQDIITAHTLIRKIL-HNMIGNTSQNIRILYGGSVNSENASSILELDNVNGLLVGGASLQAESFMKII 246          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_BORDL (Triosephosphate isomerase OS=Borrelia duttonii (strain Ly) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.340e-36
Identity = 95/248 (38.31%), Postives = 131/248 (52.82%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLK-VIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 802
            RK F+ GNWK + TS E   +   +                           V + ++  + AQN      GA T E++  ML+   + +VILGHSE R  L E+++ +  KV   L    K +I CVGETLE+RE G T+ VV  Q +     +  S+   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A +  I YGGSVN  N + L  + D+DG L+GGASLK + F+ II
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDGVYNINNNVVVMVTPTFTSLCKVCRVTKGTNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGASLKADSFLKII 249          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.056e-36
Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 805
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.056e-36
Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 805
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
The following BLAST results are available for this feature:
BLAST of CV884626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACIAD1.050e-3647.95Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]
TPIS_VIBCH1.372e-3638.28Triosephosphate isomerase OS=Vibrio cholerae GN=tp... [more]
TPIS_FRAP21.372e-3637.04Triosephosphate isomerase OS=Francisella philomira... [more]
TPIS_MYCS51.791e-3639.84Triosephosphate isomerase OS=Mycoplasma synoviae (... [more]
TPIS_LEIXX1.791e-3639.13Triosephosphate isomerase OS=Leifsonia xyli subsp.... [more]
TPIS_CLOB11.791e-3638.75Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_LAWIP2.340e-3636.99Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_BORDL2.340e-3638.31Triosephosphate isomerase OS=Borrelia duttonii (st... [more]
TPIS_STRR63.056e-3636.47Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPN3.056e-3636.47Triosephosphate isomerase OS=Streptococcus pneumon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884626 ID=CV884626; Name=CV884626; organism=Citrus sinensis; type=EST; length=909bp
AGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAAC
AAAATCCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGG
AAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAA
TCAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTC
CGTTTGTGTTTCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCAT
GTTGCTGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGA
AGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTG
GTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGA
GATAAAGTTGCTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGT
TGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGG
CTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTT
GTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAAC
CCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAG
ACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGT
TCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGA
TGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTA
TCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCTACTCG
GCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACTAGCGT
TGTAATTTT
back to top