CV884626

Overview
NameCV884626
Unique NameCV884626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_RALEH (Triosephosphate isomerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.807e-36
Identity = 89/177 (50.28%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  257 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            AQ+      GAFTGEVSA M+      +V++GHSERR    E++  V  K   AL  G+  + CVGETL QRE+G T AVV  Q +A+  A  +     VVLAYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL +  D+DG L+GGASLK
Sbjct:   60 AQDVSAEARGAFTGEVSASMVGEFGCTYVLVGHSERRTYHGETDQTVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLDALTVEQLSRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAAR-DAGVAERMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLK 235          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_SILPO (Triosephosphate isomerase OS=Silicibacter pomeroyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.891e-36
Identity = 99/248 (39.92%), Postives = 125/248 (50.40%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKI--VSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 811
            R+    GNWK NGT   +  +  ++  + A                       S +R    +  Q+C     GA TG++SA ML +     VILGHSERRA   E++  V DK   AL  GL  I C+GETL QRE+G T+ VV  Q         +   VV+AYEPVWAIGTG V T  Q  EVH  LR+ L     +E A + R++YGGSV   N  E+ A  +VDG LVGGASL       I SA
Sbjct:    2 RRKLAAGNWKMNGTGAALDALEAIAGAHSAAAVDLLICPPATLLYRAAQVAEGSRVR----IGGQDCHAVTAGAHTGDISAMMLADAGASAVILGHSERRADHGETDAQVCDKARAALEAGLIAIICIGETLAQREAGQTLDVVCAQLAGSVPDGIDGTRVVVAYEPVWAIGTGLVPTLEQIAEVHDTLRQQLIGRFGSETAEAIRLLYGGSVKPGNAAEIFAVSNVDGALVGGASLTAADFSPIVSA 245          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_NATTJ (Triosephosphate isomerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.891e-36
Identity = 94/242 (38.84%), Postives = 133/242 (54.96%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            MAR   + GNWK N    E ++ V+ + + +                      +         AQN +  + GAFTGEVS +ML  L + +VI+GHSERR +  ES++ V  KV  AL  G+K I CVGE+  QR  G T+ VV  Q K A++E +S+   NVV AYEPVWAIG+GK AT   A++V   +R  + + +++ VA    ++YGGSV   N +E   Q +++G LVGG SL  E
Sbjct:    1 MARTI-IAGNWKMNHGPRETREFVAGMKE-KYQTPPAVETVICPPFVSISDLVNESPEWLKTGAQNVYFEESGAFTGEVSPKMLAELGVEYVIIGHSERRNIFAESDEEVNKKVRIALKYGIKPIICVGESDAQRNEGKTLEVVENQVKSALSEVVSDTLQNVVFAYEPVWAIGSGKAATGEDAEQVCKHIRSVISE-LNSSVADDIPVLYGGSVKPENLEEFMDQDNINGALVGGKSLVAE 239          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.161e-35
Identity = 94/236 (39.83%), Postives = 121/236 (51.27%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            + GNWK NG     + ++  L  A                       SVL  S   V AQ+C + + GA TG++SAEMLV     WVILGHSERR    E ++ V +KV  A   GL  I CVGET ++R SG    +V  Q K ++ +  +   N V+AYEPVWAIGTG+ AT      +HA +R+ L      E     RI+YGGSV   N   L   P+V G LVGGASL  +
Sbjct:    5 IAGNWKMNGLRSTSESLLQALRDAAPHALRNCDMLICPPATLIAQAASVLAGSGIEVGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGETEDERASGRETEIVGWQIKGSLPDGFAADSNGVIAYEPVWAIGTGRTATVEDVAMMHAFIREELVRQF-GEAGRGVRILYGGSVKPENAASLLRVPEVGGALVGGASLSAQ 239          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.161e-35
Identity = 95/251 (37.85%), Postives = 131/251 (52.19%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEV----KKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLK-VIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 802
            RK F+ GNWK + TS E     K+IV  +                         K    S+  + AQN      GA T E+S  ML+   + +VILGHSE R  L ++++ +  K+   L    K +I C+GETL +RE+  T+ VV  Q +     +S  D   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A    I YGGSVN  N   L  + D+DG L+GGASLK + F++I+
Sbjct:    2 RKMFLAGNWKMHYTSVEAAGVAKQIVDGVQNINDDVVIMITPAFTSLCKVCEVTKG---SNVLLGAQNMSYENSGARTSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESLYSTSAADDIIIQYGGSVNVDNVGGLMGENDIDGALIGGASLKADSFLNIV 249          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.516e-35
Identity = 95/238 (39.92%), Postives = 124/238 (52.10%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            MARK    GNWK NGT E + ++   L Q +                     ++    D  +  Q+C  +  GA TG++SA+ML +    +VI+GHSERRA   E +  V  K   A + GL  + C+GETLE+RE+G+T+ VV  Q           +N V+AYEPVWAIGTGKV T  Q  EVH  LR  L     A       ++YGGSV   N  E+    +VDG LVGGASLK
Sbjct:    1 MARKL-AAGNWKMNGTGEHLAEL-ENLAQGDLPEGVDVLICPPATLISRAADRA---GDIAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTAENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVARFGA-AGKDLPLLYGGSVKPGNAAEIFGVSNVDGALVGGASLK 232          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.516e-35
Identity = 92/239 (38.49%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   71 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRS--DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            A +  + GNWK NG   ++ +  + L  A                      + +      F V AQ+C     GA TG++SAEMLV+     +I+GHSERRA   E++  V  K   A   G   I CVGET  +R++G T+ VV  Q        +  +N V+AYEPVWAIGTG   T    ++VH  +R  L      E  A+ RI+YGGSV  +N KEL A P+V+G LVGGASLK
Sbjct:    4 AIRALIAGNWKMNGLKAQLAEFEAMLAGAPALADKADLLVCPPATLLHAFGQKLGNGARSFAVGAQDCHANVSGAHTGDLSAEMLVDAGASAIIVGHSERRADHGETDSVVRAKAEAAWRAGAVAIVCVGETQAERDAGQTLDVVGRQLAGSLPDGATAENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCLTKRFGGE-GAAVRILYGGSVKPSNAKELMAVPEVNGALVGGASLK 241          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.981e-35
Identity = 94/249 (37.75%), Postives = 129/249 (51.81%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-----SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 802
            R   + GNWK + T  E ++ +  L  A                       +V+      SD  V AQN      GAFTGE+S  ML  L + +VI+GHSERR    E+++ V  ++A A   GL  I CVGE+ +QRE G T + +  Q     + I + +N+V+AYEP+WAIGTG+     +A  V   +R+ L +       A   I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:    2 RPILIAGNWKMHKTQAEAREFLRELGLALRSSPSGSASQRQIILCVPFTDLAVVAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_RALEJ (Triosephosphate isomerase OS=Ralstonia eutropha (strain JMP134) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.981e-35
Identity = 88/179 (49.16%), Postives = 108/179 (60.34%), Query Frame = 2
Query:  257 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            AQ+      GAFTGEV+A ML      + ++GHSERR    ES+  V  K   AL  G+  + CVGETL QRE+G T  VV  Q +A  + +S      VVLAYEPVWAIGTGK A+  QAQ VHA LR  +++   A VA    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   60 AQDVSAEARGAFTGEVAASMLGEFGCTYALVGHSERRTYHGESDAVVAAKALRALEFGIIPVICVGETLAQREAGETEVVVGRQLQAALDALSVEQLGRVVLAYEPVWAIGTGKTASSEQAQAVHAFLRAEVRER-DAGVADRMAILYGGSVKPDNAAELFSMSDIDGGLIGGASLKSE 237          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_STRCO (Triosephosphate isomerase OS=Streptomyces coelicolor GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.587e-35
Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  257 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGS----TVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 805
            AQ+     GGA+TGE+S  ML  L   +V +GHSERR    E+++ V  KV  A   GL  I CVGE L+ RE+G+    T+A V    K +A + +  ++VV+AYEPVWAIGTGKV     AQEV A +R  L +  S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I++
Sbjct:   69 AQDISAHDGGAYTGEISGPMLAKLKCTYVAVGHSERRQYHAETDEIVNAKVKAAYKHGLTPILCVGEELDVREAGNHVEHTLAQVEGGLKDLAAEQA--ESVVIAYEPVWAIGTGKVCGADDAQEVCAAIRGKLAELYSQELADKVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDSDEFVKIVR 254          
The following BLAST results are available for this feature:
BLAST of CV884626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_RALEH6.807e-3650.28Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_SILPO8.891e-3639.92Triosephosphate isomerase OS=Silicibacter pomeroyi... [more]
TPIS_NATTJ8.891e-3638.84Triosephosphate isomerase OS=Natranaerobius thermo... [more]
TPIS_GRABC1.161e-3539.83Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS_BORHD1.161e-3537.85Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_SILST1.516e-3539.92Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_RHOP51.516e-3538.49Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_SYNJB1.981e-3537.75Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_RALEJ1.981e-3549.16Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_STRCO2.587e-3547.34Triosephosphate isomerase OS=Streptomyces coelicol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884626 ID=CV884626; Name=CV884626; organism=Citrus sinensis; type=EST; length=909bp
AGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAAC
AAAATCCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGG
AAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAA
TCAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTC
CGTTTGTGTTTCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCAT
GTTGCTGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGA
AGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTG
GTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGA
GATAAAGTTGCTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGT
TGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGG
CTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTT
GTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAAC
CCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAG
ACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGT
TCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGA
TGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTA
TCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCTACTCG
GCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACTAGCGT
TGTAATTTT
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