CV884626

Overview
NameCV884626
Unique NameCV884626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_DESVV (Triosephosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.587e-35
Identity = 80/182 (43.96%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  245 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            F +  Q+ +    GA+TGE++  ML++    WV+ GHSERR +L E ++ V  K A++L  GL+V+ C+GE L++RE+G    V+A Q +  +A+  + +   ++V+AYEPVWAIGTGKVA PA+  E HA +R  L+     +  A+ RI+YGGSV   N  EL +  +VDG LVGGASL+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQ 241          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_DESVM (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.587e-35
Identity = 79/184 (42.93%), Postives = 115/184 (62.50%), Query Frame = 2
Query:  245 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            + V  Q+ +    GA+TGE+S  ML++    WV+ GHSERR ++ ES++ VG K A++++ GLKV+ C+GET+E+RE+G    V+  Q +     +        + +AYEPVWAIGTGKVA P +  E HA +R+ L      E   + RI+YGGSV   N +E+ A  +VDG LVGGASL+ +
Sbjct:   61 YSVGGQDVYPAAEGAYTGEISPGMLMDCGCAWVLTGHSERRHVIGESDELVGAKTAFSINAGLKVVLCIGETIEEREAGRLGEVLERQLETGLAGVKGDAVPAAIAVAYEPVWAIGTGKVAGPPEIVEAHALVRQLLVARF-GEGGVAVRILYGGSVKPENAREIIALDNVDGVLVGGASLQAD 243          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_DESVH (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.587e-35
Identity = 80/182 (43.96%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  245 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 781
            F +  Q+ +    GA+TGE++  ML++    WV+ GHSERR +L E ++ V  K A++L  GL+V+ C+GE L++RE+G    V+A Q +  +A+  + +   ++V+AYEPVWAIGTGKVA PA+  E HA +R  L+     +  A+ RI+YGGSV   N  EL +  +VDG LVGGASL+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQ 241          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.378e-35
Identity = 92/244 (37.70%), Postives = 126/244 (51.64%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVA-----AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            R   V GNWK NG     +  V T+ +                        S L  +  +A     AQ+      GA+TGEV A ML  +   +VI+GHSERR +  E+++ V  K   AL  G+  + CVGET ++R SG    +V  Q  K ++       + ++AYEPVWAIGTGKVA+   AQ++H  +R  L +    +VA+   I+YGGSV   N  EL A PD+DG LVGGASL P+
Sbjct:    2 RPLIVIGNWKMNGNLASNQDWVKTVARGMESGMPAGRKFAVCPSFPYLSQCSTLIKEHSLAFLSLGAQDVSAHGAGAYTGEVGASMLKEMGCEYVIVGHSERRQMHQEADESVAAKALQALDSGMTPVICVGETADERNSGRAEEIVCSQVAKQVSVLQDRLADCLIAYEPVWAIGTGKVASAQVAQDMHRAIRMQLAE-FDEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLNPQ 244          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.378e-35
Identity = 92/252 (36.51%), Postives = 134/252 (53.17%), Query Frame = 2
Query:   77 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 823
            K  + GNWK N T  + K+  S  NQ                        +    +     +A QN    + GA+TGE+SA+ML++L++ + I+GHSERR    E++  V  K   A+   +  + CVGETLE+ E+  T  V+  Q K   + + +   V++AYEP+WAIGTGK ATP QAQ+V   +RK    N++        I+YGGSV+  N ++L  Q D++G LVGGASLK +    IK  T+ K
Sbjct:    3 KTIIIGNWKMNKTFTQTKEFFSAFNQLYIENKNKINQNLDFAVALPAINVAAFSKNTTKLELAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDV-DLSKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVD--SFIKLLTLNK 243          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.378e-35
Identity = 97/249 (38.96%), Postives = 125/249 (50.20%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            M RK  + GNWK N    E    V+KI  +L                             +      AQ+      GA+TGE+S   L  L   + ++GHSERR    E+++ V  K   AL  GL  I C+GE LE RE+G+ V       +       AE+I+     V+AYEPVWAIGTG+VA+ A AQEV   +R  L +  SA+VAA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E
Sbjct:    1 MTRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDRVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQ---TVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_BRAJA (Triosephosphate isomerase OS=Bradyrhizobium japonicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.378e-35
Identity = 89/241 (36.93%), Postives = 122/241 (50.62%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 805
            + GNWK NG      +  + LN A                               V AQ+C  +  GA TG+++AEML N     +I+GHSERRA   E +  V  K   A   G+  I C+GET  QR++G T+ ++  Q        S   N+V+AYEPVWAIGTG   T    +++H  +R++L    S +  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:    9 IAGNWKMNGLKASAAEFDAMLNGAADVATKADLLVCPPATLIAAFADKARGKKVAVGAQDCHPKASGAHTGDIAAEMLANAGATAIIVGHSERRADHGEGDALVRQKAEAAWRAGVTAIVCIGETQAQRDAGQTLDILRGQLDGSLPDGSTAANLVVAYEPVWAIGTGLTPTVQDVEQIHGFIREFLTSRFSVD-GAKMRILYGGSVKPSNAAELMAVKNVNGALVGGASLKAADFLAIAK 248          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_BIFAA (Triosephosphate isomerase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.378e-35
Identity = 80/190 (42.11%), Postives = 115/190 (60.53%), Query Frame = 2
Query:  257 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 820
            AQ   V   GAFTG+VSA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +     Q   +   +S+ +   +++AYEPVWAIGTG VATP  AQ+    +R  L D     V  + RI+YGGSV+  N  EL  +PDVDGFL+GG++LK + +  I   T++
Sbjct:   72 AQAVSVTSQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESYEERRKGIELDFAVGQVHDVTRDLSDEEAAKLIVAYEPVWAIGTGMVATPQSAQDAARAIRNDLSDTFGTRVGETVRILYGGSVSSKNAVELINEPDVDGFLIGGSALKVDELTRICKLTLE 261          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCVP (Triosephosphate isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.412e-35
Identity = 95/253 (37.55%), Postives = 125/253 (49.41%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 808
            M+RK  + GNWK N    E    V+KI  +L                             +      AQ+      GA+TGE+S   L  L   + ++GHSERR   NE +  V  K A A   GL  I C+GE L+ RE+G+ V     Q +     +S       V+AYEPVWAIGTG+VA+ A AQEV   +R  L +  S E+AA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E   ++ +
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHNEDDALVAAKAAAAFKHGLTPIICIGEHLDVREAGNHVEYNVNQLRGSLAGLSAEQIGQAVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASPELAAGVRVLYGGSVNAKNVGEIVGQADVDGALVGGASLDGEQFSMLSA 253          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_HYPNA (Triosephosphate isomerase OS=Hyphomonas neptunium (strain ATCC 15444) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.412e-35
Identity = 86/243 (35.39%), Postives = 127/243 (52.26%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 811
            + GNWK NG    + ++     +                            S   +  + C   + GA TG+++AEML +    +VI+GHSERRA   E++  V  + + AL  G+  I CVGETL+QR++G  + V+  Q      + +    +V+AYEPVWAIGTG+VAT  Q  EVH  +R  L      +   +TRI+YGGS+N  N  E+ A  +V+G L+GGASLK  +F+ I + A
Sbjct:    6 IAGNWKMNGLMANLAEVERVAAEVPASSEGAETLLCLPATLIHAGSAKSEGSGLKIGGETCHANEKGAHTGDLAAEMLKDAGASYVIVGHSERRADHGETDAVVAAQASAALRAGITPIICVGETLDQRDAGEVLTVITTQMAESIPEGAEAAAIVIAYEPVWAIGTGRVATSEQIAEVHTSIRNLLVRRF-GDAGRTTRILYGGSMNPGNAAEILAVAEVNGGLIGGASLKAADFLAIYRLA 247          
The following BLAST results are available for this feature:
BLAST of CV884626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DESVV2.587e-3543.96Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVM2.587e-3542.93Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVH2.587e-3543.96Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_POLSQ3.378e-3537.70Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_MYCHR3.378e-3536.51Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_MYCGI3.378e-3538.96Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]
TPIS_BRAJA3.378e-3536.93Triosephosphate isomerase OS=Bradyrhizobium japoni... [more]
TPIS_BIFAA3.378e-3542.11Triosephosphate isomerase OS=Bifidobacterium adole... [more]
TPIS_MYCVP4.412e-3537.55Triosephosphate isomerase OS=Mycobacterium vanbaal... [more]
TPIS_HYPNA4.412e-3535.39Triosephosphate isomerase OS=Hyphomonas neptunium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884626 ID=CV884626; Name=CV884626; organism=Citrus sinensis; type=EST; length=909bp
AGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAAC
AAAATCCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGG
AAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAA
TCAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTC
CGTTTGTGTTTCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCAT
GTTGCTGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGA
AGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTG
GTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGA
GATAAAGTTGCTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGT
TGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGG
CTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTT
GTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAAC
CCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAG
ACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGT
TCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGA
TGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTA
TCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCTACTCG
GCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACTAGCGT
TGTAATTTT
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