CV884626

Overview
NameCV884626
Unique NameCV884626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.735e-34
Identity = 88/241 (36.51%), Postives = 125/241 (51.87%), Query Frame = 2
Query:   77 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSV----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            K  + GNWK N T  E +  +   +                         S+    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.735e-34
Identity = 88/241 (36.51%), Postives = 125/241 (51.87%), Query Frame = 2
Query:   77 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSV----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            K  + GNWK N T  E +  +   +                         S+    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V   +++            +T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_MYCCT (Triosephosphate isomerase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.735e-34
Identity = 90/240 (37.50%), Postives = 125/240 (52.08%), Query Frame = 2
Query:   74 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV--VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK---DNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 778
            RK  + GNWK NGT+   K +   L Q +                        L  +  +AAQN      GA+TGE+S  ML  + + +VI+GHSERR +  E++  +  K    L   +  I C GE+LE +E G T+  V  Q   I + IS  D +  ++AYEP+WAIGTGK A    A+EV  ++R+ L    DN++AE      I YGGSV  +N +E    P++DG LVGGASL
Sbjct:    2 RKKVIFGNWKMNGTN---KSLEDFLYQVDNKVNNSKITAGLAVPYVMLQTGIKLAKNVKIAAQNVHFELKGAYTGEISVSMLKEIGVEYVIIGHSERREMFFETDLDINKKAKILLENNMIPIICCGESLETKEQGKTIEFVNNQINLIYQNISKQDAIKTIIAYEPIWAIGTGKTANSLDAEEVCKKIRENLAKIYDNLTAE---KITIQYGGSVKPSNIQEYLKMPNIDGALVGGASL 235          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.735e-34
Identity = 89/235 (37.87%), Postives = 121/235 (51.49%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            V GNWK NGT   + +I +     +                      ++   S   + AQ+C  ++ GA TGEVSAEM+ +     VI+GHSERR    E +  V  K   A    L  I CVGET E+R++G T+ ++  Q        +  +N V+AYEPVWAIGTG   T +  +E HA +R+ L     AE     RI+YGGSV  +N KEL    +VDG L+GGASLK +
Sbjct:    9 VAGNWKMNGTRASLDQIKAMAEGVKGDLSARVDALICPPATLLYVATALCDDSPLMIGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAIGTGLTPTVSDVEEAHAFMRRELVSRFGAE-GGKMRILYGGSVKPSNAKELMGVANVDGALIGGASLKAD 242          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_SYNR3 (Triosephosphate isomerase OS=Synechococcus sp. (strain RCC307) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.878e-34
Identity = 87/240 (36.25%), Postives = 125/240 (52.08%), Query Frame = 2
Query:   71 ARKFFVGGNWKCNGTSEEVKKIVST-LNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            +R   + GNWK + T  + K+  +  L Q                       +++  SD  +A+QN   +  GAFTGE+SAEML+ L + + I+GHSE R   +ES++ +  +   + + GL  I CVGE+ EQR S  T  V+  Q +   E I     +V+AYEP+WAIGTGK     +A  V   +R W+          +  I YGGSV   N  EL A+ D+DG LVGGASL+P+
Sbjct:    5 SRPVVIAGNWKMHMTCAQAKQYAAAFLPQVANAPKDRSIVLAPPFTAISTLQEALAGSDVQIASQNVHWKDSGAFTGEISAEMLLELGVGYTIVGHSEPRKYFSESDEQINQRARASQAAGLIPILCVGESDEQRSSNETERVIRRQVEQGLEGIDP-SKLVVAYEPIWAIGTGKTCESEEANRVCGLIRNWVG-------YPNLTIQYGGSVKPGNIDELMAKSDIDGVLVGGASLEPD 236          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_PEDPA (Triosephosphate isomerase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.878e-34
Identity = 90/245 (36.73%), Postives = 127/245 (51.84%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAI----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 802
            + GNWK N   +E ++ +  +                                   AA+N +    GAFTGE S + L  + + +V++GHSERR    E+++ +  K     +  +  I C GETLEQRE+G T   VA Q T A+    AE+++     V+AYEP+WAIGTGK A+  QAQEV   +R+ +       VA   RI YGGSV  AN  EL  + D+DG LVGGASL PE F++++
Sbjct:    6 IAGNWKMNKNPQETQEFLDAIKGKLPDASVVESVIAAPAIDLSTLVAFSKDEQLKTAAENSYFEDEGAFTGETSPKALNEMGVNYVVIGHSERRQYFGETDEDINKKAKAIFNNNMTPIICCGETLEQREAGETNEWVAGQITNALKDLTAEQVAA---SVIAYEPIWAIGTGKTASSDQAQEVCHVIRETVAKLYDQTVADKVRIQYGGSVKPANIAELMGKEDIDGGLVGGASLDPESFLELV 247          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.878e-34
Identity = 89/245 (36.33%), Postives = 127/245 (51.84%), Query Frame = 2
Query:   68 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 787
            M+RK  + GNWK N T  E +  V  +                              S+  +AA+N +    GAFTGE S   +V+L I ++I+GHSERR   +E+++ +  K     + G   I C GETLE  E+G T   V+ Q +A      AE++SN   +V+AYEP+WAIGTGK AT   A E    +R  ++     EV+ + RI YGGSV     + L A+ ++DG LVGGASL+ +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQVSN---LVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEAD 242          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_CHRVO (Triosephosphate isomerase OS=Chromobacterium violaceum GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.878e-34
Identity = 83/179 (46.37%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  284 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 820
            GAFTGEVSA ML ++   + ++GHSERR    E N  +  K+  A++ G+  + CVGETL QRE+G  + VV EQ  AI   I++ + VV AYEPVWAIGTGKVA+  Q  E+HA ++ W   N     +A  R++YGGSV   N + + A  +VDG LVGGASL  +   +I  A  K
Sbjct:   72 GAFTGEVSAAMLADVGCRYALVGHSERRQYFREDNAALLAKMRNAIAAGVTPVLCVGETLAQREAGDYLNVVREQL-AILSDIADGEYVV-AYEPVWAIGTGKVASLEQIAEIHAFIKNWCLQNAGG--SAKIRVLYGGSVKAENAEAILATENVDGALVGGASLDADSFRVICQAAGK 246          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.878e-34
Identity = 92/242 (38.02%), Postives = 125/242 (51.65%), Query Frame = 2
Query:   86 VGGNWKCNGTSEEVKKIVSTL-NQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 805
            + GNWK NG      +  + L   AE                     K+       V AQ+C  +  GA TG++SAEML +     +I+GHSERRA   ES+  V  K       GL  I CVGET +QR++G T+ ++  Q      + S   N+ +AYEPVWAIGTG   T    +++HA +R  L +  + E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:    9 IAGNWKMNGLKASTAEFEAMLAGAAEVTGKADLLVCPPATLLAGFADKARGTRAVAVGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of CV884626 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.371e-34
Identity = 76/190 (40.00%), Postives = 119/190 (62.63%), Query Frame = 2
Query:  251 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 811
            + AQN +    GAFTGE+S   LV+L + +V+LGHSERR L  E++  V  K+  AL   L  + C+GETLE +E+  T   + +Q     + +   D   +++AYEPVWAIGTGK A+P +A +   ++R+ + +  SA+V  S +I+YGGSV+  N + +  Q ++DG LVG ASL+  +F++  ++A
Sbjct:   64 IGAQNAFHESEGAFTGEISPLNLVSLGVKYVLLGHSERRVLFGETDQLVNLKLLKALQNNLSPVLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLETKDFLNFTQAA 253          
The following BLAST results are available for this feature:
BLAST of CV884626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCHJ3.735e-3436.51Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH23.735e-3436.51Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCCT3.735e-3437.50Triosephosphate isomerase OS=Mycoplasma capricolum... [more]
TPIS1_RHIME3.735e-3437.87Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS_SYNR34.878e-3436.25Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_PEDPA4.878e-3436.73Triosephosphate isomerase OS=Pediococcus pentosace... [more]
TPIS_LACLM4.878e-3436.33Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_CHRVO4.878e-3446.37Triosephosphate isomerase OS=Chromobacterium viola... [more]
TPIS_BRASB4.878e-3438.02Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_PHYAS6.371e-3440.00Triosephosphate isomerase OS=Phytoplasma australie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884626 ID=CV884626; Name=CV884626; organism=Citrus sinensis; type=EST; length=909bp
AGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAAC
AAAATCCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGG
AAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAA
TCAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTC
CGTTTGTGTTTCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCAT
GTTGCTGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGA
AGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTG
GTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGA
GATAAAGTTGCTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGT
TGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGG
CTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTT
GTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAAC
CCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAG
ACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGT
TCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGA
TGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGATATTA
TCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCTACTCG
GCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACTAGCGT
TGTAATTTT
back to top