CV884615

Overview
NameCV884615
Unique NameCV884615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7710 contig Csv1_Contig7710:559..1372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_CYAP8 (Protein thf1 OS=Cyanothece sp. (strain PCC 8801) GN=thf1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = -3 
Query:  429 YDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEV-EGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVYRN 806
            + + M+GY  +ED+ +IF A   A+  D E+YR +AQ L    +G + S L+     ++ GE  EG+L +  +  +    F YSR FA+GL+ ++   +A              +LC  LN++   + +DLD+YR+
Sbjct:   60 FQQFMQGYRPEEDKNSIFSALCQAVGGDGEKYRHEAQTLLNQVKGMSVSDLIAMGNSARTGEPGEGMLYNTLQAIAKNPQFKYSRLFAIGLYTMVMEIDADLLKEQDKRNETFSQLCNGLNLSSDKLQKDLDLYRS 195
The following BLAST results are available for this feature:
BLAST of CV884615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THF1_CYAP81.669e-1130.88Protein thf1 OS=Cyanothece sp. (strain PCC 8801) G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884615 ID=CV884615; Name=CV884615; organism=Citrus sinensis; type=EST; length=814bp
TTAAAGAAAACTGCAATCCTGATTTGTATGAATGTTGCGGTAGAATTATG
AATAGAAAAATACATTTGGCAAAAACAGAAGAAATTTGTGTATTAGCATG
GTGAAGACTGGATGTATGCAAATCACCGTATTAAAAACAGTACACTGAAA
CATGCAAGCCTGTAAGCTTAAAACATGGTACATGGAGCATTGAGGCTCCA
ACTCTACCGCAAAGCAGACAAAAACGGGATGGAAACTTCACAAGAGATGA
TTAGCATTGCCGGCTTCCTTCACAGGTTGAATTACTGATGGGAATATAGG
TATTCTCCCAGACATTTTTTAATGGCTTCATTAGCCTTTTGCGGTTCTGT
CCTTTCTTCTCTCTTCTTCTTTTCCCTATCCACATACTCCTTCAGCAACT
CTTTAGCTTGAAGCAGCTTGGATAATAAATTGCGATATACATCAAGGTCA
CGATCCACACTTCTTTTGTTAACATTTAAGACTGCACAAAGCTTTTCTAA
CACTGTGGGTTCAGTTGCATTTGCCAGTTCAAGAAGGCGAAACAGCCCAA
CAGCAAAGAAACGGCTGTAGCTGAAATTCCCCTTGCCGCTGGCTCTTTCT
GCAATGTCGTTCAATATCCCCTCAACTTCTCCTTCTTTAGATGGGAACTC
AACTAATGAACTGGCAGTCTGACCCCGAGCCCATTCCTCTAACTTTTGTG
CATCAATTCTGTATTGCTCTGGATCCTCCTTCAGTGCCGTAATGTATGCT
TGGAAGATGGCTTCTCGATCCTCATCACTTGGATAGCCTTCCATGAGTCG
ATCATATACAGTGA
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