CV884611

Overview
NameCV884611
Unique NameCV884611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.004e-66
Identity = 124/235 (52.77%), Postives = 173/235 (73.62%), Query Frame = -1
Query:  230 DLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 925
            DL+S++ V+SG AP+ +++ + F+ K P   + QGYG+TE+  + A   +  +     K G+ G +  + E KIVDPD+G +L  NQ+GE+ ++G  IMKGY ++PEAT +T+D +GWL TGD+ ++DDD  IFIVDRLKE+IKYKG+QVPPAELEALL+THP+I DAAVV   D  AG+ P+A++VR  GS ++E+E+  FVA++V  YKR+ +V F  SIPKNPSGKILRKDL
Sbjct:  297 DLASIRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCLAFAKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQSGEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDL 531          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.004e-66
Identity = 128/237 (54.01%), Postives = 173/237 (73.00%), Query Frame = -1
Query:  230 KYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 931
            KYDLSS+++V+SG APL +E+ +    K+P  ++ QGYG+TE+  + A   +  +     K G  G +  + E KIVDP++  +L  NQ GE+ ++G  IMKGY ++PE+T +T+D EGWL TGD+ +IDDD  +FIVDRLKE+IKYKG+QV PAELEALLLTHP ISDAAVVP  D++AG+ P+A+VVR  G   +E E+  FV++QV  YKR+ RV FV +IPK+PSGKILRKDL
Sbjct:  297 KYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDL 533          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 4.337e-65
Identity = 133/247 (53.85%), Postives = 179/247 (72.47%), Query Frame = -1
Query:  212 KYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR-----KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAG-SRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL-IKLATS 931
            KYDLSS++ + SGGAPL +E+ +    K+P  ++ QGYG+TE+  +   T SL  ++     K G  G +  + E KIVDP++G +L  NQ+GE+ ++G  IMKGY ++ EAT  T+D +GWL TGD+ YIDDD  +FIVDRLKELIKYKG+QV PAELEALLLTHPKISDAAVVP  D+ AG+ P+A+VV   G +  +E+E+  F+++QV  YKR+ RV F+ +IPK+PSGKILRKDL  K+A S
Sbjct:   46 KYDLSSIRVLKSGGAPLGKELEDTLRAKFPNAKLGQGYGMTEAGPV--LTMSLAFAKEPIDVKPGACGTVVRNAEMKIVDPETGHSLPRNQSGEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVISNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKIAAS 290          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.648e-64
Identity = 130/245 (53.06%), Postives = 175/245 (71.43%), Query Frame = -1
Query:  212 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTE-----STGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL-IKLATS 928
            +DLSS++ VLSG APL +E+ E    + P+  + QGYG+TE     S  +G +    +   K G+ G +  + E K+VDP++G++L  NQ GE+ ++G  IMKGY ++  AT ST+DSEGWL TGD+ Y+DDD  IFIVDR+KELIKYKG+QVPPAELE LL++HP I+DAAVVP  D  AG+ P+A+VVR  G  L+E  V +F+A+QV  YKR+ +V FV +IPK+PSGKILRKDL  KL T+
Sbjct:  315 FDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTEAGPVLSMCLGFAKQPFQT--KSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETA 557          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.153e-64
Identity = 124/240 (51.67%), Postives = 178/240 (74.17%), Query Frame = -1
Query:  230 IRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 940
            I S+YD+SS++ ++SG APL +E+ +   +++PK    QGYG+TE+  + A   +  ++    K G+ G +  + + KI+D ++G++L  NQ GE+ ++GP IMKGY ++PE+T +T+D EGWL TGD+ YIDDD  IFIVDR+KE+IKYKG+QV PAELEALL+ HP I+DAAVVP   +EAG+ P+A+VV+   S +SE E+ +FVA+QV  YK++ RV FV +IPK+PSGKILRKDL
Sbjct:  293 IVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVK--SSEISEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDL 530          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.395e-63
Identity = 125/237 (52.74%), Postives = 165/237 (69.62%), Query Frame = -1
Query:  230 KYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 931
            KYDLSS++ V SG APL +E+ +    K+P  ++ QGYG+TE+  + A +    +     K G  G +  + E KIVDPD+G +L  NQ GE+ ++G  IMKGY +NP AT  T+D +GWL TGD+  IDDD  +FIVDRLKELIKYKG+QV PAELEALL+ HP I+D AVV   ++ AG+ P+A+VV+   S LSE++V  FV++QV  YKR+ +V F  SIPK PSGKILRKDL
Sbjct:  317 KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDL 553          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 2.380e-63
Identity = 122/237 (51.48%), Postives = 169/237 (71.31%), Query Frame = -1
Query:  230 KYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 931
            KYDLSS++ V SG APL +E+ +    K+P  ++ QGYG+TE+  + A +    +     K G  G +  + E KI+DPD+G +L  N+ GE+ ++G  IMKGY ++P AT ST+D +GWL TGD+ +IDDD  +FIVDRLKELIKYKG+QV PAELE+LL+ HP+I+D AVV   +++AG+ P+A+VVR   S +SE+E+  FV++QV  YKR+ +V F  SIPK PSGKILRKDL
Sbjct:  310 KYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDL 546          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 1.181e-62
Identity = 124/238 (52.10%), Postives = 170/238 (71.43%), Query Frame = -1
Query:  224 DLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFP-DKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIK 925
            DLSS++ VLSG AP+ +++ + F+ K P   + QGYG+TE+  + +   +  +     K G  G +  + E KI+DPD+GK+L  N  GE+ ++G  IMKGY +NPEAT +T+D+EGWL TGD+ Y+DDD  IFIVDRLKE+IKY+G+QV PAELEALL+THP I+DAAVV    + E G+ P+A+V +  GS LSE++V  FVA++V  YK++R V FV  IPK PSGKILRK+L K
Sbjct:  318 DLSSVRMVLSGAAPMGKDIEDAFMAKLPGAVLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKELRK 555          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.437e-62
Identity = 121/240 (50.42%), Postives = 167/240 (69.58%), Query Frame = -1
Query:  236 IRSKYDLSSL--QSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRK 940
            I  ++DLS L  QSV++  APL+ E++  F  K+P V++ + YGLTE + I  +    E+ +   K  + G + P++E K +DPD+G++L  N +GEL ++   +M+GYF N E T  T+D +GWL TGD+ YIDDDG IFIVDR+KELIKYKG+QV PAELEA+LLTHP + D AVVP PD+EAG+ P A VV    +   E ++++FVA  VA YK+VR V FV SIPK+ SGKI+R+
Sbjct:  291 IVDEFDLSKLKLQSVMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVGFILPNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRR 530          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.437e-62
Identity = 117/237 (49.37%), Postives = 171/237 (72.15%), Query Frame = -1
Query:  230 KYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEES---RKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 931
            ++DLSS++ VLSG APL +E+ +    + P+    QGYG+TE+  + +   +  +     K G+ G +  + E K+VDPD+G +L  N  GE+ ++GP IMKGY ++PEAT +T+D EGWL TGD+ Y+DDD  +FIVDR+KELIK+KG+QVPPAELE+LL+ HP I+DAAVVP  D  AG+ P+A+VVR A S ++E  + +F+++QV  YKR+ +V F+ +IPK+ SGKILR++L
Sbjct:  326 RHDLSSIRIVLSGAAPLGKELEDALRARLPQAIFGQGYGMTEAGPVLSMCPAFAKEPTPAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELESLLIAHPSIADAAVVPQKDDVAGEVPVAFVVRAADSDITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRREL 562          
The following BLAST results are available for this feature:
BLAST of CV884611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
4CL3_ORYSJ3.004e-6652.77Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL1_PETCR3.004e-6654.014-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_SOYBN4.337e-6553.854-coumarate--CoA ligase 1 (Fragment) OS=Glycine ma... [more]
4CL2_SOYBN1.648e-6453.064-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL_PINTA2.153e-6451.674-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL1_ARATH1.395e-6352.744-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
4CL2_ARATH2.380e-6351.484-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL1_ORYSJ1.181e-6252.10Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CLL1_ARATH3.437e-6250.424-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CL2_ORYSJ3.437e-6249.37Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884611 ID=CV884611; Name=CV884611; organism=Citrus sinensis; type=EST; length=946bp
TGTGGCCCCTGTTTANCATATAGATCATTACAAGAAAAACAAAACATCTA
AATTTCAGTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAG
TACAGCATAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAG
AACCACTACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGC
ATTCAAAGTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTT
GCCTGATGGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCC
TCTTGTATGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCT
GATAATCGACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCC
AGCCTCCTTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGAT
GAGTTAGTAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTG
TACTTGATCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATC
ATCAATGTAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCAAGAG
TTGATGTTGTAGCTTCTGGATTACTGAAATAACCTTTCATGATGGATGGA
CCCTTAAGCCAAAGCTCACCCGTCTGATTCACCAACAACGCCTTGCCACT
GTCTGGGTCCACAATCTTCGCCTCCATGCTCGGCGACAGCATTCCCGCCG
TACCATACTTTCGACTCTCCTCCAACGAATCCGTTGACGCTCCAATGCCC
GTTGACTCGGTCAAACCATAACCCTGAAGAATCCTCACCTTTGGATATTT
CTGAACGAATCCTTCTATCACTTCCCTACTCAGCGGGGCCCCACCGGATA
AAACCGATTGCAGCGAACTCAAATCGTACTTTGACCGTATCTGATC
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