CV884611

Overview
NameCV884611
Unique NameCV884611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPE (Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.546e-54
Identity = 115/235 (48.94%), Postives = 154/235 (65.53%), Query Frame = -1
Query:  230 KYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKILRKDL 931
            KYDLS L+ + SGGAPLS+E+ E   +++    + QGYGLTE+T     T   +   + G+ G + P    K+VDP +GK L  N+TGEL+ KG  IMK Y++N EAT + ++ +GWLR+GD+ Y D+DG  +IVDRLK LIKYKGYQV PAE+E +LL HP I DA V   PD+ AG+ P A VV + G  L+E  V +FV+ QV+  K +R  V F+  IPK  +GKI RK L
Sbjct:  302 KYDLSHLKEIASGGAPLSKEIGEMVKKRFKLNFVRQGYGLTETTSAVLITPDTDV--RPGSTGKIVPFHAVKVVDPTTGKILGPNETGELYFKGDMIMKSYYNNEEATKAIINKDGWLRSGDIAYYDNDGHFYIVDRLKSLIKYKGYQVAPAEIEGILLQHPYIVDAGVTGIPDEAAGELPAAGVVVQTGKYLNEQIVQNFVSSQVSTAKWLRGGVKFLDEIPKGSTGKIDRKVL 534          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.710e-53
Identity = 112/248 (45.16%), Postives = 168/248 (67.74%), Query Frame = -1
Query:  206 IRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP-KVRILQGYGLTE-STGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKILRKDLIKLATSKL 940
            I  K+DLSSL+++ SG APLSREV +   +++  K+ I QGYG TE S         L +S   G+AG+L P+   KI+ P++G+ L + + GE+ +KGP++M GY++N +AT   +D +G+ +TGD+ Y+D+DG+ FIVDR KELIK KG+QVPPAELEALLL+HPK++DA VV     + G+ P  +VV +    L+E E++D+   ++A YK  R  + F+ +IPK+ +GK+LRK+L  +   KL
Sbjct:  307 IVDKFDLSSLRTLFSGAAPLSREVEDLIKERFKGKLIIKQGYGATELSPACFVIPSGLIKS---GSAGILLPNQLVKIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKDINPPKL 551          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.916e-53
Identity = 112/248 (45.16%), Postives = 168/248 (67.74%), Query Frame = -1
Query:  206 IRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP-KVRILQGYGLTE-STGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKILRKDLIKLATSKL 940
            I  K+DLSSL+++ SG APLS EV +   +++  ++ I QGYG TE S         L +S   G+AG+L P+  AKI+ P++G+ L + + GE+ +KGP++M GY++N +AT   +D +G+L+TGD+ Y+D+DG+ FIVDR KELIK KG+QVPPAELEALLL+HPK++DA VV     + G+ P  +VV +    L+E E++D+   ++A YK  R  + F+ +IPK+ +GK+LRK+L      KL
Sbjct:  307 IVDKFDLSSLRTLFSGAAPLSSEVEDLIKERFKGRLVIKQGYGATELSPACFVIPSGLVKS---GSAGILLPNQLAKIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKDFNPPKL 551          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CL3_DICDI (Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 6.080e-51
Identity = 106/248 (42.74%), Postives = 167/248 (67.34%), Query Frame = -1
Query:  206 IRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP-KVRILQGYGLTE-STGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKILRKDLIKLATSKL 940
            I  K+DLSSL+++  G APL  E+ +   +++  ++ I QGYG TE S     + + L +S   G++G L P++ AKI+  ++G+ L + + GE+ +KGP++M GY++N +AT   +D +G+L+TGD+ Y+D+DG+ FI+DR KELIK KG+QVPPAELEALLL+HPK++DA VV     + G+ P  +VV +    L+E E++D+   ++A YK  R  + F+ +IPK+ +GK+LRK+L      KL
Sbjct:  307 IVDKFDLSSLRTLFCGAAPLGSEIEDLIKERFKGRLVIKQGYGATELSPCCFVTPNGLVKS---GSSGTLLPNLLAKIISSETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYFFIIDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKDFNNLKL 551          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 1.037e-50
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = -1
Query:  314 DLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMK------GYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQV 925
            +L SL  V SG APL+  +I  F+  +P V  +QGYG+TEST +G    +  + +KY + G+L+P+M AKIV  +SG  L     GELWL GP+IMK      GY ++ +   +  D  GWLRTGD+ Y D DG++FIV RLK+ IKYKG+Q+ PA+LEA+L+ HP+I D AV    D+EAG+ P+A+VVR++GS LS   VM++VA+QV
Sbjct:  315 ELDSLLQVSSGAAPLNHTLIHHFLHAFPHVDFIQGYGMTESTAVGTRGFNTCKHKKYASVGLLAPNMHAKIVHLESGSCLPPGSYGELWLHGPAIMKEFCFVTGYLNDDDDAFTRKD--GWLRTGDIAYFDSDGYLFIVGRLKDTIKYKGFQIAPADLEAVLIRHPEIIDVAVTSDEDEEAGEIPVAFVVRKSGSTLSCTHVMEYVAKQV 522          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 9.730e-41
Identity = 93/234 (39.74%), Postives = 144/234 (61.54%), Query Frame = -1
Query:  230 KYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 931
            K D SS++  +SGGA +   ++  F +K+  V IL+GYGL+E++ +    +  +  RK G+ G     +E K+VDP  G+ L  +Q GEL +KGP++MKGY+  P  T   L  +GWL TGDL   D+DG+ +IVDR K++I   GY V P E+E +L +HP + +A V+  PD ++G+    YVV +  S ++E ++M    + +A YKR   + F+  IPKN +GK+LR+ L
Sbjct:  279 KDDFSSIRLCISGGASMPVALLTAFEEKFG-VTILEGYGLSEASPV-TCFNPFDRGRKPGSIGTSILHVENKVVDP-LGRELPAHQVGELIVKGPNVMKGYYKMPMETEHAL-KDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKR-SGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRAL 507          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.243e-37
Identity = 88/238 (36.97%), Postives = 138/238 (57.98%), Query Frame = -1
Query:  215 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLAT 928
            YDLSS++S LSG A L  EV + F +K    ++++GYGL+E++ +    + +    K G+ G   PS +A I   ++G+     + GE+ +KGP +MKGY++ PE T + L  +GWL TGD+ Y+D++GF +I DR K++I   GY + P E+E  L  H  I +  V   PD   G+   A+VV + G++    E+  F   ++APYK  +   F   +PK   GKILR+ L++  T
Sbjct:  320 YDLSSIKSCLSGSAALPVEVKQKF-EKVTGGKLVEGYGLSEASPV-THANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWNKPEETAAVL-RDGWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKADTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLEEET 554          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: MENE_BACCN (2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.826e-37
Identity = 86/237 (36.29%), Postives = 143/237 (60.34%), Query Frame = -1
Query:  209 SSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 919
            SSL+ +L GG P  + ++E  VQK   + + Q YG+TE++    +  +     K G+AG   P    ++     GK +  N  GE+ +KGP++ +GYF   +AT  T+  +GWL TGDL Y+DD+GF++++DR  +LI   G  + PA++E +LL+HP + +A VV   D+  GQ P+A+VV+    +++E E++ F   ++A YK  + V F+  +P+N S K+LR++L +L   K
Sbjct:  252 SSLRCMLLGGGPAPKPLLEACVQK--GIPVYQTYGMTETSSQICTLSADYMLTKVGSAG--KPLFPCQLRIEKDGKVMPANVEGEIVVKGPNVTRGYFKREDATRETI-VDGWLHTGDLGYVDDEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPLVLEAGVVGKSDETWGQVPVAFVVK--AGQVTEEEMIHFCEEKLAKYKVPKAVYFLHELPRNASKKLLRRELRQLLEEK 481          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.607e-35
Identity = 90/240 (37.50%), Postives = 138/240 (57.50%), Query Frame = -1
Query:  206 DLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 925
            D SSL     GG P+ + V E +V K     +L+GYGLTE   +  S +  +     G+ G+  PS EAK+VD D  + +   Q GEL +KGP +M GY+  P+AT   + + GWL TGD+  +D++GF+ IVDR K++I   G+ V P E+E +++ HP + + A V  P   +G+    +VV++  S L+E  ++ F  RQ+  YK  + V F   +PK+  GKILR++L   A  K+
Sbjct:  323 DFSSLHLSAGGGMPVQQVVAERWV-KLTGQYLLEGYGLTECAPL-VSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNE-VPPGQPGELCVKGPQVMLGYWQRPDATDEIIKN-GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPS-LTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.607e-35
Identity = 90/240 (37.50%), Postives = 138/240 (57.50%), Query Frame = -1
Query:  206 DLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 925
            D SSL     GG P+ + V E +V K     +L+GYGLTE   +  S +  +     G+ G+  PS EAK+VD D  + +   Q GEL +KGP +M GY+  P+AT   + + GWL TGD+  +D++GF+ IVDR K++I   G+ V P E+E +++ HP + + A V  P   +G+    +VV++  S L+E  ++ F  RQ+  YK  + V F   +PK+  GKILR++L   A  K+
Sbjct:  323 DFSSLHLSAGGGMPVQQVVAERWV-KLTGQYLLEGYGLTECAPL-VSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNE-VPPGQPGELCVKGPQVMLGYWQRPDATDEIIKN-GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPS-LTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557          
The following BLAST results are available for this feature:
BLAST of CV884611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LUCI_PHOPE1.546e-5448.94Luciferin 4-monooxygenase OS=Photuris pennsylvanic... [more]
4CL2_DICDI1.710e-5345.16Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]
4CL1_DICDI2.916e-5345.16Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
4CL3_DICDI6.080e-5142.74Probable 4-coumarate--CoA ligase 3 OS=Dictyosteliu... [more]
4CLL2_ORYSJ1.037e-5048.574-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]
LCFB_BACSU9.730e-4139.74Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
LCFA_BACSU2.243e-3736.97Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
MENE_BACCN3.826e-3736.292-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
LCFA_ECOLI1.607e-3537.50Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL61.607e-3537.50Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884611 ID=CV884611; Name=CV884611; organism=Citrus sinensis; type=EST; length=946bp
TGTGGCCCCTGTTTANCATATAGATCATTACAAGAAAAACAAAACATCTA
AATTTCAGTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAG
TACAGCATAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAG
AACCACTACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGC
ATTCAAAGTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTT
GCCTGATGGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCC
TCTTGTATGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCT
GATAATCGACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCC
AGCCTCCTTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGAT
GAGTTAGTAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTG
TACTTGATCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATC
ATCAATGTAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCAAGAG
TTGATGTTGTAGCTTCTGGATTACTGAAATAACCTTTCATGATGGATGGA
CCCTTAAGCCAAAGCTCACCCGTCTGATTCACCAACAACGCCTTGCCACT
GTCTGGGTCCACAATCTTCGCCTCCATGCTCGGCGACAGCATTCCCGCCG
TACCATACTTTCGACTCTCCTCCAACGAATCCGTTGACGCTCCAATGCCC
GTTGACTCGGTCAAACCATAACCCTGAAGAATCCTCACCTTTGGATATTT
CTGAACGAATCCTTCTATCACTTCCCTACTCAGCGGGGCCCCACCGGATA
AAACCGATTGCAGCGAACTCAAATCGTACTTTGACCGTATCTGATC
back to top