CV884611

Overview
NameCV884611
Unique NameCV884611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: ACSA_PSYCK (Acetyl-coenzyme A synthetase OS=Psychrobacter cryohalolentis (strain K5) GN=acsA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.464e-12
Identity = 65/248 (26.21%), Postives = 119/248 (47.98%), Query Frame = -1
Query:  209 DLSSLQSVLSGGAPLSREVIEGF--VQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG--PSIMKGYFSNPEATTSTLDSE--GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE---NEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 925
            D SSL+ + + G P++ E  + +  V    K  ++  +  TE+ GI  +      + K G A      +  +++D D G AL     G L +    P  M+  + +     +T  +E  G+  TGD    D+DG  +I  R+ +++   G+++  AE+E+ ++ HP  ++AAVV  P    G    A+V+ ++    +E   +E+   V  ++ P   +  +  V  +PK  SGKI+R+ L  LA  +
Sbjct:  378 DRSSLRLLGTVGEPINPEAWDWYYHVVGGSKCPVVDTWWQTETGGIMLAPIPGTVAMKPGAAMNPLYGIVPEVIDTD-GVALEGAAEGNLVINSSWPGQMRTIYQDHARFLTTYFTEYPGYYFTGDGVQRDEDGHYWITGRVDDVLNVSGHRLGTAEIESSIVAHPATAEAAVVGMPHDIRGMGICAFVILKSSETATESLKSELNRHVRSEIGPIANLDAIYMVNVLPKTRSGKIMRRILRSLAAGQ 624          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: AAS_ESCF3 (Bifunctional protein aas OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=aas PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.464e-12
Identity = 65/237 (27.43%), Postives = 103/237 (43.46%), Query Frame = -1
Query:  248 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEA------TTSTLDSE---GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV-RRVAFVASIPKNPSGK 928
            YD   L+ V++G   L     + +  K+  +RIL+GYG+TE   + +   ++  + K GT G + P M+A+++         +   G L LKGP+IM GY    +       T   +  E   GW  TGD+   D+ GF+ I  R K   K  G  V    +E L L        A     D   G+   A V+    S L+ +++  +      P   V R + ++  +P   SGK
Sbjct:  476 YDFYRLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVSI--NVPMAAKPGTVGRILPGMDARLLAVPG-----IEDGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENIQGELERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGE---ALVLFTTDSELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGK 701          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: 3HBCL_THAAR (3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase OS=Thauera aromatica GN=hcl PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.464e-12
Identity = 55/205 (26.83%), Postives = 96/205 (46.83%), Query Frame = -1
Query:  245 LQGYGLTESTGIGASTD------SLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGS----RLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKI 829
            L  +G+  + GIGAS        +  ++ + G+ G   P  E +++D    +    +  G + ++  S   GY+  PE T   L  +GW   GD+   D DGF +   R  +++K  G  V P E+E+     P I++A VV  P+ +       ++V E  S    +LSE   M  +   ++ YK  R + F+  +P+  +GK+
Sbjct:  308 LDTFGIPITEGIGASETVFLFLCARPDAYRIGSCGKRVPWAEVRLLDELGNEITTPDTPGLIAIRMASQFVGYWKLPETTEKAL-RDGWYYPGDMFSFDADGFWYHNGRADDMLKISGQWVSPGEIESCASAVPGIAEAVVVAVPNDDGLTRLTLFIVPEDPSASQQKLSE-AWMTTLRGTLSIYKCPRTIQFLEELPRTATGKV 510          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: GRSA_ANEMI (Gramicidin S synthase 1 OS=Aneurinibacillus migulanus GN=grsA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 61/236 (25.85%), Postives = 109/236 (46.19%), Query Frame = -1
Query:  230 SLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALL-VNQTGELWLKGPSIMKGYFSNPEATTST------LDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 916
            S+Q++++ G+  S  ++  + +K   V  +  YG TE+T    +  + +E+  +    + +P    +I   D    L  V + GEL + G  + +GY+  PE T+        +  E   +TGD      DG I  + R+   +K +G++V   E+E++LL H  IS+ AV    D +   Y  AY V E    +   ++  F + ++  Y        +  +P   +GKI RK L
Sbjct:  294 SIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVP-IGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE--KHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: ACSA_HELAH (Acetyl-coenzyme A synthetase OS=Helicobacter acinonychis (strain Sheeba) GN=acsA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 61/256 (23.83%), Postives = 117/256 (45.70%), Query Frame = -1
Query:  230 SKYDLSSLQSVLSGGAPLSREVIEGFVQKY--PKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQ------------TGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMD-------FVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 934
            SKY+L SL+ + + G P++    + F +K    +  I+  +  TE+ G   S        +   A +  P + A++++ D  K     Q               +W      +  YFS  +     L+ E    +GD   +D++G+I I+ R  +++   G+++  AE+E+ +  H  + + AVV  PD   G+   A+VV   G++ +  E ++        +A ++    ++  V +V  +PK  SGKI+R+ L
Sbjct:  379 SKYNLDSLKVLGTVGEPINPTAWKWFYEKIGNSQCSIVDTWWQTETGGHIISPLPGATPIRASCATLPLPGIHAEVLNEDGSKTKPGEQGFLCITKPWPSMIRNIWGDEKRYIDSYFSQIQ-----LNGEYVYLSGDGAIVDENGYITIIGRTDDIVNVSGHRIGTAEVESAISKHEMVVECAVVGIPDTIKGEGLFAFVVLCDGAKCNLGESLELLKEMNHILAVEIGKIAKLDNVMYVPGLPKTRSGKIMRRIL 629          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: AAS_SHISS (Bifunctional protein aas OS=Shigella sonnei (strain Ss046) GN=aas PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 65/237 (27.43%), Postives = 104/237 (43.88%), Query Frame = -1
Query:  248 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYF--------SNPEATTSTLDSE-GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV-RRVAFVASIPKNPSGK 928
            YD   L+ V++G   L     + +  K+  +RIL+GYG+TE   + +   ++  + K GT G + P M+A+++         + + G L LKGP+IM GY           P A     + E GW  TGD+   D+ GF+ I  R K   K  G  V    +E L L        A     D   G+   A V+    + L+ +++  +      P   V R + ++  +P   SGK
Sbjct:  476 YDFYRLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVSI--NVPMAAKPGTVGRILPGMDARLLSVPG-----IEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGE---ALVLFTTDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGK 701          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: AAS_SHIFL (Bifunctional protein aas OS=Shigella flexneri GN=aas PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 65/237 (27.43%), Postives = 104/237 (43.88%), Query Frame = -1
Query:  248 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYF--------SNPEATTSTLDSE-GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV-RRVAFVASIPKNPSGK 928
            YD   L+ V++G   L     + +  K+  +RIL+GYG+TE   + +   ++  + K GT G + P M+A+++         + + G L LKGP+IM GY           P A     + E GW  TGD+   D+ GF+ I  R K   K  G  V    +E L L        A     D   G+   A V+    + L+ +++  +      P   V R + ++  +P   SGK
Sbjct:  476 YDFYRLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVSI--NVPMAAKPGTVGRILPGMDARLLSVPG-----IEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGE---ALVLFTTDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGK 701          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: AAS_SHIF8 (Bifunctional protein aas OS=Shigella flexneri serotype 5b (strain 8401) GN=aas PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 65/237 (27.43%), Postives = 104/237 (43.88%), Query Frame = -1
Query:  248 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYF--------SNPEATTSTLDSE-GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV-RRVAFVASIPKNPSGK 928
            YD   L+ V++G   L     + +  K+  +RIL+GYG+TE   + +   ++  + K GT G + P M+A+++         + + G L LKGP+IM GY           P A     + E GW  TGD+   D+ GF+ I  R K   K  G  V    +E L L        A     D   G+   A V+    + L+ +++  +      P   V R + ++  +P   SGK
Sbjct:  476 YDFYRLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVSI--NVPMAAKPGTVGRILPGMDARLLSVPG-----IEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGE---ALVLFTTDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGK 701          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: AAS_SHIB3 (Bifunctional protein aas OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=aas PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 65/237 (27.43%), Postives = 104/237 (43.88%), Query Frame = -1
Query:  248 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYF--------SNPEATTSTLDSE-GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV-RRVAFVASIPKNPSGK 928
            YD   L+ V++G   L     + +  K+  +RIL+GYG+TE   + +   ++  + K GT G + P M+A+++         + + G L LKGP+IM GY           P A     + E GW  TGD+   D+ GF+ I  R K   K  G  V    +E L L        A     D   G+   A V+    + L+ +++  +      P   V R + ++  +P   SGK
Sbjct:  476 YDFYRLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVSI--NVPMAAKPGTVGRILPGMDARLLSVPG-----IEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGE---ALVLFTTDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGK 701          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: AAS_ECOSM (Bifunctional protein aas OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=aas PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 65/237 (27.43%), Postives = 104/237 (43.88%), Query Frame = -1
Query:  248 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYF--------SNPEATTSTLDSE-GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV-RRVAFVASIPKNPSGK 928
            YD   L+ V++G   L     + +  K+  +RIL+GYG+TE   + +   ++  + K GT G + P M+A+++         + + G L LKGP+IM GY           P A     + E GW  TGD+   D+ GF+ I  R K   K  G  V    +E L L        A     D   G+   A V+    + L+ +++  +      P   V R + ++  +P   SGK
Sbjct:  476 YDFYRLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVSI--NVPMAAKPGTVGRILPGMDARLLSVPG-----IEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGE---ALVLFTTDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGK 701          
The following BLAST results are available for this feature:
BLAST of CV884611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ACSA_PSYCK1.464e-1226.21Acetyl-coenzyme A synthetase OS=Psychrobacter cryo... [more]
AAS_ESCF31.464e-1227.43Bifunctional protein aas OS=Escherichia fergusonii... [more]
3HBCL_THAAR1.464e-1226.833-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA liga... [more]
GRSA_ANEMI1.912e-1225.85Gramicidin S synthase 1 OS=Aneurinibacillus migula... [more]
ACSA_HELAH1.912e-1223.83Acetyl-coenzyme A synthetase OS=Helicobacter acino... [more]
AAS_SHISS1.912e-1227.43Bifunctional protein aas OS=Shigella sonnei (strai... [more]
AAS_SHIFL1.912e-1227.43Bifunctional protein aas OS=Shigella flexneri GN=a... [more]
AAS_SHIF81.912e-1227.43Bifunctional protein aas OS=Shigella flexneri sero... [more]
AAS_SHIB31.912e-1227.43Bifunctional protein aas OS=Shigella boydii seroty... [more]
AAS_ECOSM1.912e-1227.43Bifunctional protein aas OS=Escherichia coli (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884611 ID=CV884611; Name=CV884611; organism=Citrus sinensis; type=EST; length=946bp
TGTGGCCCCTGTTTANCATATAGATCATTACAAGAAAAACAAAACATCTA
AATTTCAGTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAG
TACAGCATAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAG
AACCACTACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGC
ATTCAAAGTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTT
GCCTGATGGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCC
TCTTGTATGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCT
GATAATCGACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCC
AGCCTCCTTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGAT
GAGTTAGTAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTG
TACTTGATCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATC
ATCAATGTAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCAAGAG
TTGATGTTGTAGCTTCTGGATTACTGAAATAACCTTTCATGATGGATGGA
CCCTTAAGCCAAAGCTCACCCGTCTGATTCACCAACAACGCCTTGCCACT
GTCTGGGTCCACAATCTTCGCCTCCATGCTCGGCGACAGCATTCCCGCCG
TACCATACTTTCGACTCTCCTCCAACGAATCCGTTGACGCTCCAATGCCC
GTTGACTCGGTCAAACCATAACCCTGAAGAATCCTCACCTTTGGATATTT
CTGAACGAATCCTTCTATCACTTCCCTACTCAGCGGGGCCCCACCGGATA
AAACCGATTGCAGCGAACTCAAATCGTACTTTGACCGTATCTGATC
back to top