CV884611

Overview
NameCV884611
Unique NameCV884611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: MENE_GEOSW (2-succinylbenzoate--CoA ligase OS=Geobacillus sp. (strain WCH70) GN=menE PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.837e-32
Identity = 79/232 (34.05%), Postives = 129/232 (55.60%), Query Frame = -1
Query:  221 SLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKL 916
            + + +L GG P  + ++E  V K   + + Q YG+TE+    A+        K G+AG   P   +++     G+     + GE+ +KGP++ KGY   P+AT   +   GW  TGD+ YID+DGF++++DR  +LI   G  V PAE+EA+LL+H  + +A V    D+  GQ P A+V R+ G  ++  ++  F    +A YK  +++ FV  +P+N S K+LR  L +L
Sbjct:  257 TFRCMLLGGGPAPKPLLE--VCKAKGIPVYQTYGMTETASQIATLAPEYSLTKLGSAG--KPLFPSQLRIEKDGQVARPYEPGEIVVKGPNVTKGYLHRPDATAKAIRG-GWFYTGDIGYIDEDGFLYVLDRRSDLIISGGENVYPAEIEAVLLSHEAVEEAGVTGIDDETWGQVPCAFVKRKRGYSVTVEQLKQFCQAHLAKYKIPKQIYFVDELPRNASQKLLRHQLKQL 483          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: ACSF2_MOUSE (Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.706e-32
Identity = 77/233 (33.05%), Postives = 128/233 (54.94%), Query Frame = -1
Query:  245 SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTES---TGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKI 934
            S YD +S++  +  G+P   E+I   + K     ++  YG TE+   T +    D+LE+  K G+ G + P  EA+IV+ ++G+   +N  GEL+++G  +M+GY+  P+ T  T+  + W RTGD+  +D+ GF  IV R K++I   G  + PAELE   L HP++ +A VV   D+  G+   A +  ++G   +  E+  F   +++ +K  R + FV   P   SGKI
Sbjct:  370 SSYDFTSIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTENSPVTFMNFPEDTLEQ--KAGSVGRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKSGETTTAEEIKAFCKGKISHFKIPRYIVFVEGYPLTISGKI 600          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: YNGI_BACSU (Putative acyl-CoA synthetase yngI OS=Bacillus subtilis GN=yngI PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.408e-31
Identity = 76/234 (32.48%), Postives = 126/234 (53.85%), Query Frame = -1
Query:  230 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEES-RKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 928
            YDLS+L++ +  G+P   EV++  +++     I   YG TE++ +   T + +   R+  T G   P  E KIV+P + + +     GEL  +G  +MKGY+ + +AT   ++ +GWL TGDL  +D+DG+  I  RLK+++   G  + P E+E  L  HP + D  VV  PD + G+   A++  + G  +S +E+  +   ++A +K  R V F    P   SGKI +  L
Sbjct:  302 YDLSTLRTGIMAGSPCPSEVMKAVIERMGMKDITIAYGQTEASPVITQTRANDSFIRRVETTGRALPHTEVKIVEPGTCQEVQRGMQGELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKFGEEAAAWIKLKDGKSVSPDELKAYCKGKIARHKIPRYVIFTDDYPMTASGKIQKYKL 535          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.408e-31
Identity = 84/221 (38.01%), Postives = 122/221 (55.20%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D L + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRLGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVLGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKVLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO55 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.839e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPSDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.402e-31
Identity = 83/221 (37.56%), Postives = 122/221 (55.20%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K +  +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGQAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVLSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.137e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.137e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPSDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.137e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.137e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
The following BLAST results are available for this feature:
BLAST of CV884611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MENE_GEOSW2.837e-3234.052-succinylbenzoate--CoA ligase OS=Geobacillus sp. ... [more]
ACSF2_MOUSE3.706e-3233.05Acyl-CoA synthetase family member 2, mitochondrial... [more]
YNGI_BACSU1.408e-3132.48Putative acyl-CoA synthetase yngI OS=Bacillus subt... [more]
CAIC_SHIDS1.408e-3138.01Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECO551.839e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO272.402e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SHISS3.137e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_SHIFL3.137e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSE3.137e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOHS3.137e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884611 ID=CV884611; Name=CV884611; organism=Citrus sinensis; type=EST; length=946bp
TGTGGCCCCTGTTTANCATATAGATCATTACAAGAAAAACAAAACATCTA
AATTTCAGTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAG
TACAGCATAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAG
AACCACTACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGC
ATTCAAAGTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTT
GCCTGATGGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCC
TCTTGTATGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCT
GATAATCGACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCC
AGCCTCCTTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGAT
GAGTTAGTAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTG
TACTTGATCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATC
ATCAATGTAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCAAGAG
TTGATGTTGTAGCTTCTGGATTACTGAAATAACCTTTCATGATGGATGGA
CCCTTAAGCCAAAGCTCACCCGTCTGATTCACCAACAACGCCTTGCCACT
GTCTGGGTCCACAATCTTCGCCTCCATGCTCGGCGACAGCATTCCCGCCG
TACCATACTTTCGACTCTCCTCCAACGAATCCGTTGACGCTCCAATGCCC
GTTGACTCGGTCAAACCATAACCCTGAAGAATCCTCACCTTTGGATATTT
CTGAACGAATCCTTCTATCACTTCCCTACTCAGCGGGGCCCCACCGGATA
AAACCGATTGCAGCGAACTCAAATCGTACTTTGACCGTATCTGATC
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