CV884611

Overview
NameCV884611
Unique NameCV884611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO24 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.137e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL6 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6 GN=caiC PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.097e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERF-SVRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL5 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.097e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERF-SVRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO8A (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O8 (strain IAI1) GN=caiC PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.097e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVVNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO81 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O81 (strain ED1a) GN=caiC PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.097e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEICD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOUT (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.989e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.989e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSAQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOK1 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O1:K1 / APEC GN=caiC PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.989e-31
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLC (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 9.128e-31
Identity = 82/221 (37.10%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G +    EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRD-DHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: ACSF2_DANRE (Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.128e-31
Identity = 79/238 (33.19%), Postives = 127/238 (53.36%), Query Frame = -1
Query:  230 SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGI---GASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 934
            +K+DLSS++  ++ G+P   EV+   +       ++ GYG TE++ +   G   DS E  RK  T G +SP  EAK+VDP +G+ + +   GEL ++G  +M  Y+ + E T   +  + W +TGD+  +D   +  I  R+K+LI   G  + PAE+E  L THPKI +A VV   D+  G+   A +  + G   +  E+  +   ++A YK  R + FV   P   +GKI +  L
Sbjct:  361 AKFDLSSVRGGIAAGSPCPPEVMRKILNVMGIKEMVIGYGTTENSPVTFCGFPVDSAE--RKIVTVGCISPHTEAKVVDPTTGEIVPLGAQGELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACIRLKEGQECTVEEIKAYCKGKIAHYKVPRYILFVQDYPLTITGKIQKHKL 596          
The following BLAST results are available for this feature:
BLAST of CV884611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CAIC_ECO243.137e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOL64.097e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOL54.097e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO8A4.097e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO814.097e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOUT6.989e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOSM6.989e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOK16.989e-3137.56Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLC9.128e-3137.10Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
ACSF2_DANRE9.128e-3133.19Acyl-CoA synthetase family member 2, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884611 ID=CV884611; Name=CV884611; organism=Citrus sinensis; type=EST; length=946bp
TGTGGCCCCTGTTTANCATATAGATCATTACAAGAAAAACAAAACATCTA
AATTTCAGTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAG
TACAGCATAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAG
AACCACTACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGC
ATTCAAAGTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTT
GCCTGATGGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCC
TCTTGTATGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCT
GATAATCGACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCC
AGCCTCCTTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGAT
GAGTTAGTAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTG
TACTTGATCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATC
ATCAATGTAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCAAGAG
TTGATGTTGTAGCTTCTGGATTACTGAAATAACCTTTCATGATGGATGGA
CCCTTAAGCCAAAGCTCACCCGTCTGATTCACCAACAACGCCTTGCCACT
GTCTGGGTCCACAATCTTCGCCTCCATGCTCGGCGACAGCATTCCCGCCG
TACCATACTTTCGACTCTCCTCCAACGAATCCGTTGACGCTCCAATGCCC
GTTGACTCGGTCAAACCATAACCCTGAAGAATCCTCACCTTTGGATATTT
CTGAACGAATCCTTCTATCACTTCCCTACTCAGCGGGGCCCCACCGGATA
AAACCGATTGCAGCGAACTCAAATCGTACTTTGACCGTATCTGATC
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