CV884611

Overview
NameCV884611
Unique NameCV884611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLU (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.192e-30
Identity = 82/221 (37.10%), Postives = 120/221 (54.30%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERF-SVRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO5E (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.656e-30
Identity = 81/221 (36.65%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      +A+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + +DR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDTFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYDAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO57 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 GN=caiC PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.656e-30
Identity = 81/221 (36.65%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      +A+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + +DR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDTFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYDAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_SALTY (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella typhimurium GN=caiC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 81/221 (36.65%), Postives = 119/221 (53.85%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G +  S EA+I D D  + L   + GE+ +KG    +I K Y+  PEAT   L+ EGWL TGD  Y D+DG+ + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A++V   G  LSE E   F    +A +K    +     +P+N SGKI++K+L
Sbjct:  299 LSEQEKDDFTERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRD-DQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAKALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_SALPC (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi C (strain RKS4594) GN=caiC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 81/221 (36.65%), Postives = 119/221 (53.85%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G +  S EA+I D D  + L   + GE+ +KG    +I K Y+  PEAT   L+ EGWL TGD  Y D+DG+ + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A++V   G  LSE E   F    +A +K    +     +P+N SGKI++K+L
Sbjct:  299 LSAQEKDAFTERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRD-DQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_SALHS (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella heidelberg (strain SL476) GN=caiC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 81/221 (36.65%), Postives = 119/221 (53.85%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G +  S EA+I D D  + L   + GE+ +KG    +I K Y+  PEAT   L+ EGWL TGD  Y D+DG+ + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A++V   G  LSE E   F    +A +K    +     +P+N SGKI++K+L
Sbjct:  299 LSEQEKDDFTERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRD-DQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAKALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_SALCH (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella choleraesuis GN=caiC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 81/221 (36.65%), Postives = 119/221 (53.85%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G +  S EA+I D D  + L   + GE+ +KG    +I K Y+  PEAT   L+ EGWL TGD  Y D+DG+ + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A++V   G  LSE E   F    +A +K    +     +P+N SGKI++K+L
Sbjct:  299 LSAQEKDAFTERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRD-DQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ESCF3 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiC PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 82/221 (37.10%), Postives = 120/221 (54.30%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  VR+L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A+VV   G  LSE E  +F  + +A +K    +     +P+N SGKI+RK L
Sbjct:  299 LSEQEKDAFCERFG-VRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPQATARVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGEILSEEEFFNFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKAL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: CAIC_ECO45 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 82/221 (37.10%), Postives = 120/221 (54.30%), Query Frame = -1
Query:  230 LSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG---PSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 883
            LS +  + F +++  V +L  YG+TE T +G   D   + R++ + G      EA+I D D  + L   + GE+ +KG    +I K YF NP+AT   L+++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  299 LSEQEKDAFCERFG-VSLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-DHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CV884611 vs. ExPASy Swiss-Prot
Match: ACSF2_RAT (Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 75/233 (32.19%), Postives = 125/233 (53.65%), Query Frame = -1
Query:  245 SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTES---TGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKI 934
            S YD ++++  +  G+    E+I   + K     ++  YG TE+   T +    D+LE+  K G+ G + P  EA+IV+ ++G+   +N  GEL ++G  +M+GY+  P+ T  T+  + W RTGD+  +D+ GF  IV R K++I   G  + PAELE     HP++ +A VV   D   G+   A +  ++G   +E E+  F   +++ +K  R + FV   P   SGKI
Sbjct:  370 SSYDFTTIRGGVIAGSLAPPELIRAIISKMNMKELVVVYGTTENSPVTFMNFPEDTLEQ--KAGSVGRIMPHTEAQIVNMETGELTKLNMPGELCIRGYCVMQGYWGEPQKTFETVGQDRWYRTGDIASMDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMGEEICACIRLKSGETTTEEEIKAFCKGKISHFKIPRYIVFVEGYPLTVSGKI 600          
The following BLAST results are available for this feature:
BLAST of CV884611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CAIC_ECOLU1.192e-3037.10Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO5E2.656e-3036.65Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO572.656e-3036.65Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SALTY3.469e-3036.65Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALPC3.469e-3036.65Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALHS3.469e-3036.65Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALCH3.469e-3036.65Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_ESCF33.469e-3037.10Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO453.469e-3037.10Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
ACSF2_RAT3.469e-3032.19Acyl-CoA synthetase family member 2, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884611 ID=CV884611; Name=CV884611; organism=Citrus sinensis; type=EST; length=946bp
TGTGGCCCCTGTTTANCATATAGATCATTACAAGAAAAACAAAACATCTA
AATTTCAGTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAG
TACAGCATAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAG
AACCACTACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGC
ATTCAAAGTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTT
GCCTGATGGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCC
TCTTGTATGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCT
GATAATCGACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCC
AGCCTCCTTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGAT
GAGTTAGTAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTG
TACTTGATCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATC
ATCAATGTAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCAAGAG
TTGATGTTGTAGCTTCTGGATTACTGAAATAACCTTTCATGATGGATGGA
CCCTTAAGCCAAAGCTCACCCGTCTGATTCACCAACAACGCCTTGCCACT
GTCTGGGTCCACAATCTTCGCCTCCATGCTCGGCGACAGCATTCCCGCCG
TACCATACTTTCGACTCTCCTCCAACGAATCCGTTGACGCTCCAATGCCC
GTTGACTCGGTCAAACCATAACCCTGAAGAATCCTCACCTTTGGATATTT
CTGAACGAATCCTTCTATCACTTCCCTACTCAGCGGGGCCCCACCGGATA
AAACCGATTGCAGCGAACTCAAATCGTACTTTGACCGTATCTGATC
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