CV884610

Overview
NameCV884610
Unique NameCV884610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884610 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.083e-19
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   15 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA 479
            M  +PA  YR I    Y +  +  G+P  K+  Y +G  +   +++   + L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRA 156          
BLAST of CV884610 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.668e-14
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 3
Query:   36 CYRQIKNKPYPK------SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSLHAQEALRRAKFKFPGRQK 506
            CYR+++  PY +        +  G     +R++ +G   +   E+ +   LV+ E   +   A+EA R+  NKY+    GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +   +  L+ A+ K P R +
Sbjct:    9 CYRKLE-VPYTRVSRSKNKNYIPGAKPTMVRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172          
The following BLAST results are available for this feature:
BLAST of CV884610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD2.083e-1933.3350S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ7.668e-1428.4850S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884610 ID=CV884610; Name=CV884610; organism=Citrus sinensis; type=EST; length=525bp
TCAGGGCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATA
AAAAATAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCC
CAAGATCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAAT
TCCCTTTCTGTGTGCACTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGT
GAAGCTCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTT
TGCCGGGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATG
TCTTGCGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAA
ACTGGTATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGT
TGCCATTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTC
TTCATGCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGC
CAAAAAATCATTGTCAGCACAAAGT
back to top