CV884609

Overview
NameCV884609
Unique NameCV884609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 57/109 (52.29%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  516 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA 842
            FVKVSMDG PYLRKVD+  Y  Y EL +AL  MF   TIG               L+D     ++   YED DGDWMLVGDVPW+MFV SCKR+R+M+  EA GL+  A
Sbjct:   47 FVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIG---------------LMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.498e-22
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 3
Query:  393 AKAQVVGWPPVRSFRKNIMAV-------QKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF-------TIGNCGSQGMKDFMNESKLIDLLNGS-DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSE 818
            A A VVGWPP+RSFR+N+ +        +  N+  + K       N   VK++MDG P  RK+DL  Y SY  LS A+ ++F  F       T      QG  D +       LL+GS +Y   YED +GD MLVGDVPW +FV + KRLR+++ SE
Sbjct:  172 AAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKN-PLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKI----FYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.336e-22
Identity = 68/185 (36.76%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  312 SGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEE---GDNKAXXXXXXNVA-FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF----------TIGNCGSQGMKDFMNESKLIDLLNGS--DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSE 818
            S G+     T    A        S+P A   VVGWPPVRSFR+N+ +    ++    G + A       VA FVKV+MDG P  RKVDL  +  Y ELS A+ ++F             T     + G      E  +  LL+G   +Y   YED +GD MLVGDVPW+MF+ + +RLR+++ S+
Sbjct:   29 SSGLQGNTSTAADGAKGNDGFKASRPAAP--VVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSD 211          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.357e-22
Identity = 70/178 (39.33%), Postives = 90/178 (50.56%), Query Frame = 3
Query:  351 SASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDN-----------------KAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMN----ESKLIDLLNGS-DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSE 818
            S S+T  T   K  A   VVGWPPVRSFRKN+ +        D+                 K          FVK++M G P  RKVDL  + SY++LS  + K+F             +DF +    E  +  LL+G+ +Y  TYED +GD MLVGDVPW MFV S KRLR++K SE
Sbjct:   80 SPSSTKTTS-HKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQ------RDFPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  399 AQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPR 839
            A VVGWPPVRS R+N+ A  K+    + K          +VK++M+G P  RKV+L  Y +YQ+LS A+ ++FS            KD  + ++         Y   YED +GD +LVGDVPW+MFV + KRL ++K S A  L+PR
Sbjct:   47 APVVGWPPVRSSRRNLTAQLKE----EMKKKESDEEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSK-----------KDSWDLNR--------QYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPR 170          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 74/221 (33.48%), Postives = 100/221 (45.25%), Query Frame = 3
Query:  267 ADTVVDLKLNLS-------TKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMA---------------VQKDNEEG-------DNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT--IGNCGSQGMKDFMNE--SKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL 830
            ++T +DL L LS       +  S     + +  G   SA  +   +    +   VGWPP+R++R N +                +QK+  +        D+            VKV+MDG    RKVDL    SY  L   L  MF      +    +QG K       SKL+D    S+Y+ TY+DKDGDWMLVGDVPW MF+ S  RLRIMK S   G+
Sbjct:   41 SETELDLALGLSIGRRKVRSSLSSSSSSLTRESGTKRSADSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSNTQGYKTIKETCTSKLLD--GSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.402e-20
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  381 SKPPAKAQVVGWPPVRSFRKNIMA------------VQKDNEEGDNK---AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRI 803
            ++  + AQ+VGWPPVR+FRKN+              V+  ++EG      A      +  FVKV+++G    RK+DLK ++SY  LS AL  MF  F      S G+    NE + ++  +   YV  YED +GD MLVGDVPW++F+ S KRL I
Sbjct:   85 NRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.923e-18
Identity = 69/189 (36.51%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  270 DTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKP--PAKAQV-VGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSS----FTIGNCGSQ--GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMK 809
            D   DL+L LS   S    ++Q     +A+A  A D S P  P  +QV   WPP++ F ++  A+QK +  G   A         FVKV M+G P  RK+DL L   Y  L   L  MF +      +  C  Q  G K              + +V TYED+DGDWM+VGDVPW++F+ S K+LRI +
Sbjct:   35 DLSTDLRLGLSLSTSSSSSLLQ-----AAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRS--ALQKASAAGGGGARRR---RTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMECHQQVPGQK--------------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.923e-18
Identity = 69/189 (36.51%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  270 DTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKP--PAKAQV-VGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSS----FTIGNCGSQ--GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMK 809
            D   DL+L LS   S    ++Q     +A+A  A D S P  P  +QV   WPP++ F ++  A+QK +  G   A         FVKV M+G P  RK+DL L   Y  L   L  MF +      +  C  Q  G K              + +V TYED+DGDWM+VGDVPW++F+ S K+LRI +
Sbjct:   35 DLSTDLRLGLSLSTSSSSSLLQ-----AAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRS--ALQKASAAGGGGARRR---RTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMECHQQVPGQK--------------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 55/179 (30.73%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  279 VDLKLNLSTKESGGIDVIQKTKGKSAS--ATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMK 809
            +++  + S+  S  +D  + +  +S+   +   T  S  P +     WPP++S  ++ +  ++    GD+ +         FVKV M+G P  RK+DL ++  Y+ L + L  MF +  I  CG++  K                +V TYEDKDGDWM+VGD+PWDMF+++ +RL+I +
Sbjct:    1 MEVSNSCSSFSSSSVDSTKPSPSESSVNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSL--------FVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSII--CGNRDRKH---------------HVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
The following BLAST results are available for this feature:
BLAST of CV884609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA26_ORYSJ6.722e-2352.29Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA6_ORYSJ1.498e-2240.76Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA16_ORYSJ3.336e-2236.76Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA18_ARATH4.357e-2239.33Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA28_ARATH2.162e-2140.14Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA10_ARATH2.162e-2133.48Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA25_ORYSJ1.402e-2039.10Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA4_ORYSJ2.923e-1836.51Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA4_ORYSI2.923e-1836.51Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA31_ARATH8.504e-1830.73Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884609 ID=CV884609; Name=CV884609; organism=Citrus sinensis; type=EST; length=924bp
AAAGTCTACTCTCGATGCCCTCTCAAACACAAACAAACCAACCAAAAAAA
AAAAACAAGAGAGTGATAATTAATTAATTAAGAGAGGAGTTTAAGGAGTG
TTTAGTGTGTAAATTTGAAAGTTTCATTAAGATGATTAACTTCGAAGCGA
CGGAGCTTCGGCTAGGGTTACCGGGCGGTAACGGCGGAAGCAGTGAAGGT
GGTGGTGGTGGCGGCGGCGGTGAGAAAGCCAAGAACAATAACATTAATGG
CATGAAGAGAGGATTTGCAGACACCGTTGTTGATTTGAAGCTAAATCTTT
CAACAAAAGAGTCAGGTGGGATTGATGTAATTCAGAAGACGAAGGGCAAA
AGTGCTTCTGCTACTGGGGCTACAGACCTTTCAAAGCCTCCGGCCAAGGC
ACAAGTTGTGGGTTGGCCACCCGTTAGATCATTCAGAAAGAACATCATGG
CCGTCCAAAAGGACAATGAAGAAGGTGATAATAAGGCTAGCAGCAGCAGC
AGCAGCAATGTAGCTTTTGTTAAAGTGAGCATGGATGGTGCCCCATACTT
GCGCAAGGTTGATTTGAAGCTATACAAAAGCTACCAAGAACTCTCTGATG
CCCTTGGCAAAATGTTCAGCTCTTTCACCATTGGTAACTGTGGGTCACAA
GGGATGAAGGATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAATGG
CTCAGATTATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTTG
TTGGTGATGTACCATGGGATATGTTTGTTGATTCATGCAAACGCTTAAGA
ATAATGAAAGGATCCGAGGCCATTGGACTTGCACCAAGGGCAGTTGAGAA
GTGCAAGAACAGAAGCTGAAGATTTGATTATGATCAGCAACTTTTTGCCA
AAAGCAGCTTGTTAAAAAAGCTGA
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