CV884609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.450e-17 Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3 Query: 381 SKPPAKAQVVGWPPVRSFRKNIMA------------VQKDNEEGDNK---AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWD 770 ++ + AQ+VGWPPVR+FRKN+ ++ ++EG A + FVKV+++G RK+DLK ++SY LS AL MF F S G+ NE + ++ + YV YED +GD MLVGDVPWD Sbjct: 33 NRAASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPWD 172
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.573e-16 Identity = 56/137 (40.88%), Postives = 68/137 (49.64%), Query Frame = 3 Query: 396 KAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM 806 K VVGWPPV S R+ +VKV +G RKVDL L+ SY EL+ L +MF + QG K N+ D + + V TYED DGDWMLVGDVPWD F S KRL+I+ Sbjct: 73 KKTVVGWPPVSSARR-------------------ACGGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTND-----HQGEKKMAND----DHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.344e-14 Identity = 52/154 (33.77%), Postives = 69/154 (44.81%), Query Frame = 3 Query: 345 GKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM 806 G G +D + ++VGWPPV+ + ++D G +VKV M+G RK+DL + SY EL D L MF S N+ D Y TYED +GDWM VGDVPW+ F S KRL+I+ Sbjct: 59 GNGRGGDGDSDGEMGNKRRKLVGWPPVKCLHR-----RRDGGCGGG-----------YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPS--------------TNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13 Identity = 52/178 (29.21%), Postives = 81/178 (45.51%), Query Frame = 3 Query: 282 DLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 815 DL+L LS S G G S +A D + + AV+++ E N +VKV+M+G P RK+DL Y++L L MF++ + ++ D+ N +V TY DK+GDWM+VGDVPW+MF+ + +RL+I + + Sbjct: 33 DLRLGLSFGTSSGTQYFNGGYGYSVAAPAVEDA-------------------EYVAAVEEEEENECNSVGSF------YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILW-------------AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 3.697e-13 Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 3 Query: 516 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF-SSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSE 818 FVKV M+G P RK+DL Y+ L L MF +S T +C Q M +K+ +V TYED++GDWM+ GDVPW++F+ S KRLRI + + Sbjct: 105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKV-------HHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.835e-12 Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 3 Query: 516 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMK 809 +VKV+M+G P RK+DL Y +L L MF++ + ++ D+ + +V TY DK+GDWM+VGDVPW+MF+ S +RL+I + Sbjct: 84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW-------------AEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168 The following BLAST results are available for this feature:
BLAST of CV884609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884609 ID=CV884609; Name=CV884609; organism=Citrus sinensis; type=EST; length=924bpback to top |