CV884609

Overview
NameCV884609
Unique NameCV884609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.450e-17
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  381 SKPPAKAQVVGWPPVRSFRKNIMA------------VQKDNEEGDNK---AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWD 770
            ++  + AQ+VGWPPVR+FRKN+              ++  ++EG      A      +  FVKV+++G    RK+DLK ++SY  LS AL  MF  F      S G+    NE + ++  +   YV  YED +GD MLVGDVPWD
Sbjct:   33 NRAASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPWD 172          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.573e-16
Identity = 56/137 (40.88%), Postives = 68/137 (49.64%), Query Frame = 3
Query:  396 KAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM 806
            K  VVGWPPV S R+                         +VKV  +G    RKVDL L+ SY EL+  L +MF +        QG K   N+    D  + +  V TYED DGDWMLVGDVPWD F  S KRL+I+
Sbjct:   73 KKTVVGWPPVSSARR-------------------ACGGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTND-----HQGEKKMAND----DHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 52/154 (33.77%), Postives = 69/154 (44.81%), Query Frame = 3
Query:  345 GKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM 806
            G      G +D      + ++VGWPPV+   +     ++D   G             +VKV M+G    RK+DL +  SY EL D L  MF S               N+    D      Y  TYED +GDWM VGDVPW+ F  S KRL+I+
Sbjct:   59 GNGRGGDGDSDGEMGNKRRKLVGWPPVKCLHR-----RRDGGCGGG-----------YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPS--------------TNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 52/178 (29.21%), Postives = 81/178 (45.51%), Query Frame = 3
Query:  282 DLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 815
            DL+L LS   S G        G S +A    D                    + + AV+++ E   N           +VKV+M+G P  RK+DL     Y++L   L  MF++  +              ++  D+ N   +V TY DK+GDWM+VGDVPW+MF+ + +RL+I + +
Sbjct:   33 DLRLGLSFGTSSGTQYFNGGYGYSVAAPAVEDA-------------------EYVAAVEEEEENECNSVGSF------YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILW-------------AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.697e-13
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  516 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF-SSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSE 818
            FVKV M+G P  RK+DL     Y+ L   L  MF +S T  +C  Q     M  +K+        +V TYED++GDWM+ GDVPW++F+ S KRLRI +  +
Sbjct:  105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKV-------HHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
BLAST of CV884609 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.835e-12
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  516 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMK 809
            +VKV+M+G P  RK+DL     Y +L   L  MF++  +              ++  D+ +   +V TY DK+GDWM+VGDVPW+MF+ S +RL+I +
Sbjct:   84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW-------------AEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168          
The following BLAST results are available for this feature:
BLAST of CV884609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA22_ORYSJ1.450e-1737.93Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA9_ORYSJ3.573e-1640.88Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]
IAA20_ORYSJ3.344e-1433.77Auxin-responsive protein IAA20 OS=Oryza sativa sub... [more]
IAA20_ARATH1.271e-1329.21Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA8_ORYSJ3.697e-1342.16Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA30_ARATH1.835e-1237.76Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884609 ID=CV884609; Name=CV884609; organism=Citrus sinensis; type=EST; length=924bp
AAAGTCTACTCTCGATGCCCTCTCAAACACAAACAAACCAACCAAAAAAA
AAAAACAAGAGAGTGATAATTAATTAATTAAGAGAGGAGTTTAAGGAGTG
TTTAGTGTGTAAATTTGAAAGTTTCATTAAGATGATTAACTTCGAAGCGA
CGGAGCTTCGGCTAGGGTTACCGGGCGGTAACGGCGGAAGCAGTGAAGGT
GGTGGTGGTGGCGGCGGCGGTGAGAAAGCCAAGAACAATAACATTAATGG
CATGAAGAGAGGATTTGCAGACACCGTTGTTGATTTGAAGCTAAATCTTT
CAACAAAAGAGTCAGGTGGGATTGATGTAATTCAGAAGACGAAGGGCAAA
AGTGCTTCTGCTACTGGGGCTACAGACCTTTCAAAGCCTCCGGCCAAGGC
ACAAGTTGTGGGTTGGCCACCCGTTAGATCATTCAGAAAGAACATCATGG
CCGTCCAAAAGGACAATGAAGAAGGTGATAATAAGGCTAGCAGCAGCAGC
AGCAGCAATGTAGCTTTTGTTAAAGTGAGCATGGATGGTGCCCCATACTT
GCGCAAGGTTGATTTGAAGCTATACAAAAGCTACCAAGAACTCTCTGATG
CCCTTGGCAAAATGTTCAGCTCTTTCACCATTGGTAACTGTGGGTCACAA
GGGATGAAGGATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAATGG
CTCAGATTATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTTG
TTGGTGATGTACCATGGGATATGTTTGTTGATTCATGCAAACGCTTAAGA
ATAATGAAAGGATCCGAGGCCATTGGACTTGCACCAAGGGCAGTTGAGAA
GTGCAAGAACAGAAGCTGAAGATTTGATTATGATCAGCAACTTTTTGCCA
AAAGCAGCTTGTTAAAAAAGCTGA
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