CV884608

Overview
NameCV884608
Unique NameCV884608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884608_ssr324 microsatellite CV884608_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884608_ssr343 microsatellite CV884608_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12293 contig Csv1_Contig12293:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLT 664
            +LLDVKPWDDETDM +LE  VRSV++ GL WGASKLVPVGYGI+KLQI   + DD V  D L+EE +T
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 263          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLT 664
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+KLQI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLT 664
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+KLQI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLT 664
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+KLQI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLT 664
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+KLQI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            +LLD+KPWDDETDM  +E  VRS+ M GL WGASKLVPV +G+KKLQI   + DD VSVD L+E+    E   +Y+Q
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK---IEAFEDYVQ 227          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEE 655
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+KLQI   + DD V  D L EE
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKVGTDQLEEE 261          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDL-VSVDSLIEE 655
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKKLQI IT+++DL VSVD LIE+
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDLKVSVDDLIEK 243          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDL-VSVDSLIEE 655
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKKLQI IT+++DL VSVD LIE+
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDLKVSVDDLIEK 193          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEE 655
            V+LD+KPWDDETDM ++E+ VRSV+M GL WGA+KL+P+ YGIKKL IM  + DD VS+D L E+
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDELQEK 188          
The following BLAST results are available for this feature:
BLAST of CV884608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D_RABIT1.656e-1967.65Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT2.824e-1966.18Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MOUSE2.824e-1966.18Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1D_MACFA2.824e-1966.18Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN2.824e-1966.18Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_ARTSA2.824e-1958.44Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1D_BOVIN4.817e-1967.69Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1B2_CAEEL4.817e-1968.18Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL4.817e-1968.18Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1B_ARTSA1.401e-1863.08Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884608 ID=CV884608; Name=CV884608; organism=Citrus sinensis; type=EST; length=691bp
GTTGAAGTTGTGCGTCTCTTCTTGCCTCTGCCTTGATTTGAAGACCAAAA
TGGCCATCACTTTTTCGGATCTCCACACAGAGTCAGGCCTTAAGTCTCTC
GATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAA
AGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTT
TCCCCAACGCCAGCAGCTGGTACGACAGCGTTTCTTCACGTCTCGCCCCA
AGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCC
AGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATG
ATGATTTGGATCTCTTTGGAGATGAGACTGAGGAGGATAAGAAAGCAGCA
GAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGG
AAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACA
TGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTT
TGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGCTGCA
AATCATGATTACAATCGTTGACGATCTTGTTTCTGTGGATTCACTGATAG
AGGAACACCTCACAGCTGAGCCCTGCAATGAGTATATTCAG
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