CV884608

Overview
NameCV884608
Unique NameCV884608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884608_ssr324 microsatellite CV884608_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884608_ssr343 microsatellite CV884608_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12293 contig Csv1_Contig12293:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            V LDVKPWDDET M +LE+AVRS++M GL WG SKLVPVG+G+ K QI + + DD VS+++L EE    E   +Y+Q
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEE---LEGFEDYVQ 204          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEE 655
            +LLDVKPWDDETDM +LE+ VRS+EM GL WGASKLV VGYGIKKL I + + D  VS D L E+
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK 197          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            ++LDVKPWDDETD+K +E  +R +   GL WGASK VPV +GI+KL I   + DD VS+D L EE    E   +++Q
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE---IEKLEDFVQ 246          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 616
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+KLQI   +
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV 248          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSL 646
            V LDVKPWDDETD+ +L   V+++EM GL WGA + +PVG+GIKKLQI + + D LVS+D L
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL 191          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSL 646
            V LDVKPWDDET+++++   V+++EM GL WGA + +P+G+GIKKLQI   + DD VS+D L
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL 184          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIE 652
            +L DVKPWDD  D++ L   + +V+  GL WG  KLVPV +G+KKLQ +I I DD V  D L E
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEE 202          
The following BLAST results are available for this feature:
BLAST of CV884608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B_SCHPO6.955e-1857.14Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1B_DICDI1.186e-1767.69Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1D_DROME4.985e-1650.65Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP1.110e-1571.15Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL7.198e-1559.68Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST2.094e-1454.84Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR7.448e-1251.5625 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884608 ID=CV884608; Name=CV884608; organism=Citrus sinensis; type=EST; length=691bp
GTTGAAGTTGTGCGTCTCTTCTTGCCTCTGCCTTGATTTGAAGACCAAAA
TGGCCATCACTTTTTCGGATCTCCACACAGAGTCAGGCCTTAAGTCTCTC
GATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAA
AGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTT
TCCCCAACGCCAGCAGCTGGTACGACAGCGTTTCTTCACGTCTCGCCCCA
AGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCC
AGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATG
ATGATTTGGATCTCTTTGGAGATGAGACTGAGGAGGATAAGAAAGCAGCA
GAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGG
AAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACA
TGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTT
TGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGCTGCA
AATCATGATTACAATCGTTGACGATCTTGTTTCTGTGGATTCACTGATAG
AGGAACACCTCACAGCTGAGCCCTGCAATGAGTATATTCAG
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