CV884604

Overview
NameCV884604
Unique NameCV884604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884604_ssr5 microsatellite CV884604_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13673 contig Csv1_Contig13673:62..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: ISU1_SCHPO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Schizosaccharomyces pombe GN=isu1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.804e-22
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = -3
Query:  256 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 489
            G I D  FKTFGCGSAIASSS  T  VKG  ++E   IKNT+IAK L LPPVKLHCSMLAEDAIK+AVK Y +K+  P
Sbjct:  102 GVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLTP 179          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_AZOVI (Nitrogen fixation protein nifU OS=Azotobacter vinelandii GN=nifU PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = -3
Query:  268 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 495
            ET  I+DA F+TFGCGSAIASSS  TE VKG  + E L I N +IA +L  LPP K+HCS++  +A++AAV +Y  +
Sbjct:   48 ETDVILDAGFQTFGCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGE 124          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_AZOCH (Nitrogen fixation protein nifU OS=Azotobacter chroococcum mcd 1 GN=nifU PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.260e-14
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  259 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 495
            ET  I+DA F+TFGCGSAIASSS  TE VKG  + + L I N +IA  L  LP  K+HCS++  + ++AAV +Y  +  +
Sbjct:   48 ETDVILDAGFQTFGCGSAIASSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVANYRGEELR 127          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.260e-14
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  235 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAE 495
            E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y   R  P AA + +
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY---RGIPLAAHDED 138          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.870e-14
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = -3
Query:  277 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 495
            E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_AQUAE (NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  241 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASE 495
            E   I D  FKTFGCGSAIA SS+ TE VKGK +Q  L++   +I + L  LPP K+HC+ L  + +  A+KDY  K+ +   AS+
Sbjct:   49 ENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRVEEASK 134          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_KLEPN (Nitrogen fixation protein nifU OS=Klebsiella pneumoniae GN=nifU PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  268 IVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 483
            I +A F+TFGCGSAIASSS  TE + G  + E   I N +IA +L  LPP K+HCS++ ++A++AA+ ++  +
Sbjct:   52 IEEAGFQTFGCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGE 124          
The following BLAST results are available for this feature:
BLAST of CV884604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISU1_SCHPO1.804e-2267.95Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_AZOVI5.620e-1654.55Nitrogen fixation protein nifU OS=Azotobacter vine... [more]
NIFU_AZOCH5.260e-1448.75Nitrogen fixation protein nifU OS=Azotobacter chro... [more]
NIFU_ANASP5.260e-1445.45Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ6.870e-1448.65Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NIFU_AQUAE4.453e-1346.51NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1... [more]
NIFU_KLEPN6.430e-1246.58Nitrogen fixation protein nifU OS=Klebsiella pneum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884604 ID=CV884604; Name=CV884604; organism=Citrus sinensis; type=EST; length=500bp
ATATTTCATTCATTCAGTTACACAAGTACAATTACTTATGTGCAAAACTG
CAGGTCCTTGGATCATTATTCATACACAGTTCTTACTAATAACCATAAAC
TTTACCCCCTCCACCACCCGACATCAATCTTTAGGAGGTGCAGTTATCCT
GATACATCTCCACAGGCAGAACATTAACATCATTTTCAAATGTTTACATC
AATATCTTCAAACATCAGCAGCCCTTGGAGGTAGTTCTGCCTCTGAAGCA
GCACTTGGTTTGGTACGTTTAGCTTCGTAATCTTTTACAGCAGCCTTGAT
AGCATCTTCAGCAAGCATGCTGCAATGCAGTTTAACAGGTGGTAGAGAAA
GATGTTTTGCAATTTCCGTGTTTTTAATGGACAAGACTTCCTGCATCTGC
TTCCCTTTCACCCATTCCGTTGCAACAGAAGATGAAGCGATGGCCGAGCC
ACAGCCAAAGGTCTTGAAGCAGGCGTCGACGATCTGACCAGTCTCTTCAT
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