CV884603
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 9.594e-22 Identity = 73/291 (25.09%), Postives = 134/291 (46.05%), Query Frame = 2 Query: 53 ILHVQGGQCGNQIGSKFWE-VVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RTGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 898 I+ VQ GQCGNQIG + ++ ++ D H Q +++E G + RAVL+D+EP ++ + G+ + F Q G+GNNWA G+ G ++++D++RKE E CD GF + ++++Y + + + ++P + +V+ YN+ L++ L ++D +V +N+A++ IC + + + SF D+N +++ + V + F + N L L +L+P P + P S S Y T Sbjct: 3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSIRNVPHMSENSLAYSTFT 291
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 8.122e-21 Identity = 75/295 (25.42%), Postives = 133/295 (45.08%), Query Frame = 2 Query: 53 ILHVQGGQCGNQIGSKFWEVVC-DEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RTGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSD---------LRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 898 I+ VQ GQCGNQIG + ++ + D H Q ++ E G V RAVL+D+EP ++ + G+ + F Q G+GNNWA G+ G + ++++++++ E E CD L GF + K++++Y + + ++P + +V+ YN+ L++ L ++D ++ +N+A++ IC + + + SF DLN +++ + V F + D L L +L+P P V P S S Y A T Sbjct: 3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV-----FQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFT 291
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16 Identity = 69/278 (24.82%), Postives = 122/278 (43.88%), Query Frame = 2 Query: 50 EILHVQGGQCGNQIGSKFWEVVCDEHGI---DPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV-EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 871 EIL +Q G+ G G++FW+ + E + G+ T+D NV++ E++ F+PR ++ DL + + Y +++ + GN+W KG+Y EG + V +++RK E + ++ F V + I IR YP + S+FP + V +PYN+ LS+ D + N A+ ++ + SF +N++I T+S + L L + + L VN P+ L F + L S+ Sbjct: 4 EILTLQVGKTGILTGNEFWKSLVREKNLLSDFSLGKNSPTND------NVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYY-EGISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENLLTKNQINNELSFRKVNYIIGKTISIIMNTLNHNFTLETLISPLIVN--PYLNLFFSTINIDILLSK 272
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16 Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 2 Query: 647 LDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPEL 910 +DNEA+YDIC R L + P + +LN LI+ +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + A +V E+ Sbjct: 1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEI 88
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2 Query: 671 ICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPEL 910 IC R L + PS+ +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L V E+ Sbjct: 1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEV 80 The following BLAST results are available for this feature:
BLAST of CV884603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 425
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884603 ID=CV884603; Name=CV884603; organism=Citrus sinensis; type=EST; length=910bpback to top |