CV884603

Overview
NameCV884603
Unique NameCV884603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.594e-22
Identity = 73/291 (25.09%), Postives = 134/291 (46.05%), Query Frame = 2
Query:   53 ILHVQGGQCGNQIGSKFWE-VVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RTGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV-----TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 898
            I+ VQ GQCGNQIG + ++ ++ D H              Q      +++E   G  + RAVL+D+EP  ++    +    G+     +  F Q  G+GNNWA G+   G    ++++D++RKE E CD   GF +                   ++++Y + + +   ++P     + +V+ YN+ L++  L  ++D  +V +N+A++ IC + + +   SF D+N +++  +  V     +    F  + N  L  L  +L+P P      +   P  S  S  Y   T
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSIRNVPHMSENSLAYSTFT 291          
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.122e-21
Identity = 75/295 (25.42%), Postives = 133/295 (45.08%), Query Frame = 2
Query:   53 ILHVQGGQCGNQIGSKFWEVVC-DEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RTGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSD---------LRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 898
            I+ VQ GQCGNQIG + ++ +  D H              Q      ++ E   G  V RAVL+D+EP  ++    +    G+     +  F Q  G+GNNWA G+   G +  ++++++++ E E CD L GF +                  K++++Y   + +   ++P     + +V+ YN+ L++  L  ++D  ++ +N+A++ IC + + +   SF DLN +++  +  V     F    + D         L  L  +L+P P      V   P  S  S  Y A T
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV-----FQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFT 291          
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 69/278 (24.82%), Postives = 122/278 (43.88%), Query Frame = 2
Query:   50 EILHVQGGQCGNQIGSKFWEVVCDEHGI---DPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV-EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 871
            EIL +Q G+ G   G++FW+ +  E  +      G+   T+D      NV++ E++   F+PR ++ DL     + +    Y +++  +         GN+W KG+Y EG    + V +++RK  E  + ++ F V +              I  IR  YP   +   S+FP    +  V  +PYN+ LS+       D  +   N A+ ++  +       SF  +N++I  T+S +   L     L + +  L VN  P+  L F  +    L S+
Sbjct:    4 EILTLQVGKTGILTGNEFWKSLVREKNLLSDFSLGKNSPTND------NVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYY-EGISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENLLTKNQINNELSFRKVNYIIGKTISIIMNTLNHNFTLETLISPLIVN--PYLNLFFSTINIDILLSK 272          
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  647 LDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPEL 910
            +DNEA+YDIC R L +  P + +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     + A +V E+
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEI 88          
BLAST of CV884603 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  671 ICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPEL 910
            IC R L +  PS+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L V E+
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEV 80          
The following BLAST results are available for this feature:
BLAST of CV884603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TBD_MACFA9.594e-2225.09Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_MOUSE8.122e-2125.42Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]
TBGN_GUITH2.704e-1624.82Tubulin gamma chain, nucleomorph OS=Guillardia the... [more]
TBAA_PNECA6.023e-1644.32Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA_OCTVU1.814e-1243.75Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884603 ID=CV884603; Name=CV884603; organism=Citrus sinensis; type=EST; length=910bp
TTTTTTCTCTCTCTAGCGAAATCTTCAGTAAGTCTCAGGAAAAATGAGGG
AGATCCTTCATGTTCAGGGTGGACAATGTGGTAACCAGATTGGTTCCAAG
TTCTGGGAGGTTGTCTGTGATGAACATGGCATCGACCCAACCGGAAGATA
CATTGGCACCTCAGATCTGCAGTTGGAGCGTGTCAATGTCTACTACAATG
AGGCCTCCTGTGGGCGGTTTGTTCCTCGTGCAGTTCTCATGGATTTGGAG
CCTGGCACCATGGACAGTGTTAGAACTGGTCCATACGGCCAGATTTTCAG
GCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAACAATTGGGCCA
AGGGTCACTACACTGAGGGTGCTGAGCTTATTGATGCTGTTCTTGATGTT
GTGAGAAAAGAGGCTGAGAACTGTGACTGTCTTCAAGGTTTCCAAGTCTG
CCACTCTTTGGGTGGAGGAACTGGTTCTGGAATGGGTACCTTGTTGATCT
CAAAAATTAGGGAGGAGTATCCTGACAGGATGATGCTCACATTCTCAGTG
TTCCCTTCTCCAAAGGTCTCCGATACAGTTGTTGAGCCCTACAATGCAAC
CCTCTCTGTTCACCAGCTTGTTGAGAATGCAGATGAGTGCATGGTCCTTG
ATAATGAGGCTTTGTATGACATCTGCTTCAGAACTCTTAAATTGACCACA
CCAAGCTTTGGTGACTTGAACCACTTGATTTCTGCAACCATGAGTGGCGT
CACTTGCTGCCTCAGGTTTCCTGGTCAACTGAACTCTGACCTTCGAAAGC
TTGCTGTTAACTTGATTCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGG
TTTGCTCCCCTTACCTCCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGT
CCCAGAACTT
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