CV884602

Overview
NameCV884602
Unique NameCV884602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 49/147 (33.33%), Postives = 82/147 (55.78%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP    G  +A        + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNSCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVAGGDLAKVQRIVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDIAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 47/145 (32.41%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  433 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 843
            V E+T   ++  N M   DP  G+Y+    ++RG + T++V   +  V+NK +   V+W P   K  +C  PP          +  A   + N+T+I + ++R+ ++F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y
Sbjct:  289 VSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 47/147 (31.97%), Postives = 82/147 (55.78%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y++   ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = -3
Query:  427 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL--------SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 843
            V E+T   ++  N M   DPRHG+Y+    ++RG +   +    +  ++ K +  FV+W P   K  +C  PP  +        + A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  288 VQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434          
The following BLAST results are available for this feature:
BLAST of CV884602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TBA5_CHICK2.463e-2133.33Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA3_YEAST2.463e-2132.41Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA2_PATVU2.463e-2131.97Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA_BOMMO3.217e-2131.97Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBAT_ONCMY3.217e-2131.97Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA3_RAT3.217e-2131.97Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE3.217e-2131.97Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3_DROME3.217e-2131.97Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]
TBA3C_HUMAN3.217e-2131.97Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA2_NEUCR3.217e-2131.29Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884602 ID=CV884602; Name=CV884602; organism=Citrus sinensis; type=EST; length=845bp
ATAGCATATCACATTATGGCATAATAGACAGTAACATAATAACATCATCG
ACCACAGAACATAAGAAGACAATGGCTAAGGATAATAGAATACAAAAATA
GATCAAATCCAGAAAAGATAGTAAGGTAAAGGTAGCACACACTACTACTT
TCAAAACATGCATCCATCCTTTAATTTCTCCATCCTCAATAGTCGATCCT
CATCGATCCCATCATCCATCACACACTTTACTGCTACTTGATGTAAAAAA
CTCGAGAAAGAAAAACTATAACACATCATAGATCATTTTTTGCAATCCCA
AGCAAGGTTGACAAAACCAGCTACACAGACAAATATGCATCATACACAAC
TTCTTCAAATATGCTCCATTTCTCCCTCTTCCTCATCTTCGTACTCACCT
TCCTCATCGGCGGTGGCATCCTGGTACTGCTGGTACTCAGACACAAGGTC
ATTCATATTGCTCTCAGCTTCAGTGAACTCCATTTCATCCATTCCTTCAC
CAGTGTACCAGTGAAGGAAAGCCTTTCTCCTAAACATAGCTGTGAATTGC
TCACTCACTCTTCGGAACATTTCTTGGATGGATGTTGAGTTCCCGATGAA
GGTGGATGCCATGGAGAGACCTCTGGGAGGAATGTCACAAACACTGGACT
TCACATTGTTTGGAATCCACTCCACAAAGTAGGAAGAGTTTTTGTTTTGA
ACATTGATCATCTGCTCGTCGACTTCCTTGGTGCTCATTTTACCCCTGAA
CATGGCAGAAGCAGTGAGGTAACGACCGTGCCTTGGGTCGGCAGCACACA
TCATGTTCTTGGCATCCCACATTTGTTGGGTAAGTTCTGGGACTG
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