CV884602
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18 Identity = 49/146 (33.56%), Postives = 86/146 (58.90%), Query Frame = -3 Query: 433 VPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 843 V ELT ++D ++M D G++++ M+RG +S++EV+ + ++ +N+ FV W P + K + P G S AST I N T++ ++F++V++ F MF ++AF+H Y GEGM+E EFT+A ++ +L +Y Sbjct: 293 VQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17 Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = -3 Query: 409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPRGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843 V ++T ++ N M DP G+Y+ ++RG + K+V+ + +V+ K FV+W P K + I G +A + N+T+I E + R+ +F M+ ++AF+HW+ GEGM+E EF EA ++ L +Y + TA Sbjct: 291 VQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTA 443
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16 Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = -3 Query: 412 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQYQDAT 807 + + ADP+H YL + M RG + ++ + + K S FV W K+S+C +PP G S + + N+T ++ F + E+F ++++KA LH Y EGM+E FTEA S+++ L+ EY Q DAT Sbjct: 331 HQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQL-DAT 460
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.941e-16 Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = -3 Query: 478 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSSVCDIPP------RGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 843 V +T ++ N+M P G+Y+ M+RG + KE + + N++N+ S FV+W P K + + P G +MA T + N+T+I ++F R++ +F M+ ++AF+HWY GEGM+E E Sbjct: 197 VDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15 Identity = 45/133 (33.83%), Postives = 75/133 (56.39%), Query Frame = -3 Query: 412 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQYQDAT 807 + + ADPRH YL + + RG + ++ + + K + FV W K+S+C +PP G S + + N+T ++ F + E+FT ++++KA LH Y +GM+E FTEA S+++ L+ EY DAT Sbjct: 331 HQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDL-DAT 460
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15 Identity = 42/150 (28.00%), Postives = 78/150 (52.00%), Query Frame = -3 Query: 427 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 837 +LT Q ++ N M DPR+G+Y+ + ++RG ++ + + ++ K+S VEW P K + P + A + + N+T++ E + + +F M ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 290 QLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 439
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15 Identity = 40/130 (30.77%), Postives = 69/130 (53.08%), Query Frame = -3 Query: 475 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 843 V E+T ++ N M DPR+G+Y+ ++RG + K+V ++ K + FV+ P K +C PP + + + N+T+I E + +S +F ++ ++AF+HWY GEGM+E EF Sbjct: 289 VMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12 Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = -3 Query: 511 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL--------SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLH 843 V E+T ++ ++ M D R G+Y+ +FRG ++ K+ + NV+ K ++ FVEW P K + P L S A + N+T+I E ++R++ +F MF ++AF+H Sbjct: 262 VQEITNACFEPQSQMVRCDTRKGKYMACCLLFRGDVNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380 The following BLAST results are available for this feature:
BLAST of CV884602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884602 ID=CV884602; Name=CV884602; organism=Citrus sinensis; type=EST; length=845bpback to top |