CV884602

Overview
NameCV884602
Unique NameCV884602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:927..1771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 49/146 (33.56%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  433 VPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 843
            V ELT  ++D  ++M   D    G++++   M+RG +S++EV+  +  ++ +N+  FV W P + K  +   P     G S AST      I N T++ ++F++V++ F  MF ++AF+H Y GEGM+E EFT+A  ++ +L  +Y
Sbjct:  293 VQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPRGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            V ++T   ++  N M   DP  G+Y+    ++RG +  K+V+  + +V+ K    FV+W P   K  +     I   G  +A        + N+T+I E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++  L  +Y +    TA
Sbjct:  291 VQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTA 443          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = -3
Query:  412 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQYQDAT 807
            + +  ADP+H  YL  + M RG +   ++   +  +  K S  FV W     K+S+C +PP G S +   + N+T ++  F  + E+F  ++++KA LH Y   EGM+E  FTEA S+++ L+ EY Q  DAT
Sbjct:  331 HQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQL-DAT 460          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.941e-16
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  478 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSSVCDIPP------RGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 843
            V  +T  ++   N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G +MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  197 VDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/133 (33.83%), Postives = 75/133 (56.39%), Query Frame = -3
Query:  412 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQYQDAT 807
            + +  ADPRH  YL  + + RG +   ++   +  +  K +  FV W     K+S+C +PP G S +   + N+T ++  F  + E+FT ++++KA LH Y   +GM+E  FTEA S+++ L+ EY    DAT
Sbjct:  331 HQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDL-DAT 460          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 42/150 (28.00%), Postives = 78/150 (52.00%), Query Frame = -3
Query:  427 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 837
            +LT Q ++  N M   DPR+G+Y+  + ++RG    ++ +  +  ++ K+S   VEW P   K  +    P  +  A             + + N+T++ E + +    +F  M  ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  290 QLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 439          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 40/130 (30.77%), Postives = 69/130 (53.08%), Query Frame = -3
Query:  475 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 843
            V E+T   ++  N M   DPR+G+Y+    ++RG +  K+V      ++ K +  FV+  P   K  +C  PP  +          +  + N+T+I E +  +S +F  ++ ++AF+HWY GEGM+E EF
Sbjct:  289 VMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = -3
Query:  511 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL--------SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLH 843
            V E+T   ++ ++ M   D R G+Y+    +FRG ++ K+ +    NV+ K ++ FVEW P   K  +    P  L        S A   + N+T+I E ++R++ +F  MF ++AF+H
Sbjct:  262 VQEITNACFEPQSQMVRCDTRKGKYMACCLLFRGDVNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380          
The following BLAST results are available for this feature:
BLAST of CV884602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TBA1_ENTHI7.416e-1833.56Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA8_CAEEL1.652e-1730.07Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBE_HUMAN4.069e-1635.34Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBA_DICPU6.941e-1631.85Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBE_MOUSE1.184e-1533.83Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBA_GLOLA4.499e-1528.00Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA_AJECA5.876e-1530.77Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_ENCHE7.942e-1230.25Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884602 ID=CV884602; Name=CV884602; organism=Citrus sinensis; type=EST; length=845bp
ATAGCATATCACATTATGGCATAATAGACAGTAACATAATAACATCATCG
ACCACAGAACATAAGAAGACAATGGCTAAGGATAATAGAATACAAAAATA
GATCAAATCCAGAAAAGATAGTAAGGTAAAGGTAGCACACACTACTACTT
TCAAAACATGCATCCATCCTTTAATTTCTCCATCCTCAATAGTCGATCCT
CATCGATCCCATCATCCATCACACACTTTACTGCTACTTGATGTAAAAAA
CTCGAGAAAGAAAAACTATAACACATCATAGATCATTTTTTGCAATCCCA
AGCAAGGTTGACAAAACCAGCTACACAGACAAATATGCATCATACACAAC
TTCTTCAAATATGCTCCATTTCTCCCTCTTCCTCATCTTCGTACTCACCT
TCCTCATCGGCGGTGGCATCCTGGTACTGCTGGTACTCAGACACAAGGTC
ATTCATATTGCTCTCAGCTTCAGTGAACTCCATTTCATCCATTCCTTCAC
CAGTGTACCAGTGAAGGAAAGCCTTTCTCCTAAACATAGCTGTGAATTGC
TCACTCACTCTTCGGAACATTTCTTGGATGGATGTTGAGTTCCCGATGAA
GGTGGATGCCATGGAGAGACCTCTGGGAGGAATGTCACAAACACTGGACT
TCACATTGTTTGGAATCCACTCCACAAAGTAGGAAGAGTTTTTGTTTTGA
ACATTGATCATCTGCTCGTCGACTTCCTTGGTGCTCATTTTACCCCTGAA
CATGGCAGAAGCAGTGAGGTAACGACCGTGCCTTGGGTCGGCAGCACACA
TCATGTTCTTGGCATCCCACATTTGTTGGGTAAGTTCTGGGACTG
back to top