CV884602

Overview
NameCV884602
Unique NameCV884602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:927..1771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.278e-74
Identity = 131/145 (90.34%), Postives = 141/145 (97.24%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELTQQM+DAKNMMCA+DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP+GL MA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  286 VPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.278e-74
Identity = 131/145 (90.34%), Postives = 141/145 (97.24%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELTQQM+DAKNMMCA+DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP+GL MA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  286 VPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.278e-74
Identity = 130/145 (89.66%), Postives = 141/145 (97.24%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELTQQ +DAKNMMCAADPRHGRYLTA+ MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+K+SVCDIPP+GL M++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD TA
Sbjct:  286 VPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPQGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDGTA 430          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.278e-74
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELT Q +DAKNMMCAADPRHGRYLTAS MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GL M++TF+GNST+IQEMF+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  286 VPELTSQCFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSATFVGNSTAIQEMFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.278e-74
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELTQQ +DAKNMMCAADPRHGRYLTAS MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GL M++ FIGNST+IQEMF+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  261 VPELTQQQFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 405          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.245e-73
Identity = 129/145 (88.97%), Postives = 141/145 (97.24%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELTQQM+DAKNMMCA+DPRHGRYLTA A+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KS VCDIPP+GL M+ TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  286 VPELTQQMFDAKNMMCASDPRHGRYLTACALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSGVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.626e-73
Identity = 130/144 (90.28%), Postives = 141/144 (97.92%), Query Frame = -3
Query:  412 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 843
            VPELTQQM+DAKNMM A+DP HGRYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GL M++TFIGN+T+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  283 VPELTQQMFDAKNMMAASDPAHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSATFIGNNTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 426          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.621e-73
Identity = 130/145 (89.66%), Postives = 139/145 (95.86%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELTQQM+DAKNMMC +DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP GL MA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  286 VPELTQQMFDAKNMMCTSDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPLGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.067e-73
Identity = 130/144 (90.28%), Postives = 138/144 (95.83%), Query Frame = -3
Query:  412 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 843
            VPELTQQM+DAKNMM AADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSSVCDIPP+GL MA TFIGN+T IQEMFRRV EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  286 VPELTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSVCDIPPKGLKMAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429          
BLAST of CV884602 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.376e-72
Identity = 132/145 (91.03%), Postives = 136/145 (93.79%), Query Frame = -3
Query:  409 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 843
            VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ+INVQNKNSSYFVEWIPNNVKSSVCDIPP GL MA TFIGNS+SIQEMFRR +   TAMFRRKAFLHWYT EGMDEMEFTE ESNMNDLVSEYQQYQDA+A
Sbjct:   82 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNMNDLVSEYQQYQDASA 226          
The following BLAST results are available for this feature:
BLAST of CV884602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TBB_PLAFK4.278e-7490.34Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_PLAF74.278e-7490.34Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_PHYCI4.278e-7489.66Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]
TBB4_OOMCK4.278e-7489.66Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB2_OOMCK4.278e-7489.66Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]
TBB_EIMTE1.245e-7388.97Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB_EUGGR1.626e-7390.28Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBB_PLAFA3.621e-7389.66Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB_TRYBR8.067e-7390.28Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB3_ANEPH1.376e-7291.03Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884602 ID=CV884602; Name=CV884602; organism=Citrus sinensis; type=EST; length=845bp
ATAGCATATCACATTATGGCATAATAGACAGTAACATAATAACATCATCG
ACCACAGAACATAAGAAGACAATGGCTAAGGATAATAGAATACAAAAATA
GATCAAATCCAGAAAAGATAGTAAGGTAAAGGTAGCACACACTACTACTT
TCAAAACATGCATCCATCCTTTAATTTCTCCATCCTCAATAGTCGATCCT
CATCGATCCCATCATCCATCACACACTTTACTGCTACTTGATGTAAAAAA
CTCGAGAAAGAAAAACTATAACACATCATAGATCATTTTTTGCAATCCCA
AGCAAGGTTGACAAAACCAGCTACACAGACAAATATGCATCATACACAAC
TTCTTCAAATATGCTCCATTTCTCCCTCTTCCTCATCTTCGTACTCACCT
TCCTCATCGGCGGTGGCATCCTGGTACTGCTGGTACTCAGACACAAGGTC
ATTCATATTGCTCTCAGCTTCAGTGAACTCCATTTCATCCATTCCTTCAC
CAGTGTACCAGTGAAGGAAAGCCTTTCTCCTAAACATAGCTGTGAATTGC
TCACTCACTCTTCGGAACATTTCTTGGATGGATGTTGAGTTCCCGATGAA
GGTGGATGCCATGGAGAGACCTCTGGGAGGAATGTCACAAACACTGGACT
TCACATTGTTTGGAATCCACTCCACAAAGTAGGAAGAGTTTTTGTTTTGA
ACATTGATCATCTGCTCGTCGACTTCCTTGGTGCTCATTTTACCCCTGAA
CATGGCAGAAGCAGTGAGGTAACGACCGTGCCTTGGGTCGGCAGCACACA
TCATGTTCTTGGCATCCCACATTTGTTGGGTAAGTTCTGGGACTG
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