CV884600
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Giyd1 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.062e-24 Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461 FF YLL PR +G Y+GFTVNP RR+RQHN G + GA RT R PW+MVL I+GFP+ V+AL+FEWAWQHP S + +S + A +++ ML +P W R L Sbjct: 10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPL 125
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24 Identity = 57/131 (43.51%), Postives = 81/131 (61.83%), Query Frame = 3 Query: 114 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFS-GVANKIKLAYTMLNLPNWERYALVNLVLFNQWSVRQ 500 GF YLL + P+FKGHTYIG+TVNP RRI+QHNG + + GA +T +++PW M+L ++GFP ++ ALQFEWAWQ P S ++ AA K V ++ +L + W R L L +W +R+ Sbjct: 9 GFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVHGFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNR-----LPLHIRWLMRE 134
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_HUMAN (Structure-specific endonuclease subunit SLX1 OS=Homo sapiens GN=GIYD1 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24 Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461 FF YLL L PR++G Y+GFTVN RR++QHNG + GA RT R PWEMVL ++GFP++V+AL+FEWAWQHP S + + + A +++ ML P W R L Sbjct: 13 FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPL 128
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=GIYD1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24 Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 3 Query: 117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461 FF YLL L PR +G Y+GFTVNP RR++QHNG + GA RT R PWEMVL ++GFP+ V+AL+FEWAWQHP S + + + A +++ ML P W R L Sbjct: 6 FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGFPSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPL 121
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Giyd1 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.270e-24 Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 3 Query: 117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461 FF YLL PR +G Y+GFTVNP RR+RQHN G + GA RT R PW+MVL ++GFP+ V+AL+FEWAWQHP S + +S + +++ ML +P W R L Sbjct: 10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPL 125
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_XENLA (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=giyd1 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.827e-23 Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 3 Query: 111 KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461 +GF+ YLL P++KG YIGFTVNP RRI+QHNG + + GA +T R PW+MVL ++GFP +++AL+FEWAWQHP S + K S + + ML + W R L Sbjct: 6 EGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLIVHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPL 123
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_ANOGA (Structure-specific endonuclease subunit SLX1 homolog OS=Anopheles gambiae GN=AGAP002259 PE=3 SV=3) HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22 Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 102 DQRKGFFACYLLTSLCP--RFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVAN---KIKLAYTMLNLPNWERYALV 464 ++ + F+ YLL S P +F G TYIG+TV+P RRI+QHN GE GA RT R PW MVL ++GFP N+SAL+FEWAWQ P S +++ K +N ++ ML + W R LV Sbjct: 5 EEIEDFYGVYLLVSKSPNPKFAGRTYIGYTVDPNRRIKQHNRGEDAGGARRTSNRGPWTMVLIVHGFPNNISALRFEWAWQQPRVSRRLKQMPELQKKLRKESNFEYNFRILTEMLRMGPWNRLPLV 131
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_LEIIN (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=LinJ25.1380 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22 Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 3 Query: 117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKR-RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRA 368 F YLLTSL P+ +G YIG+TVNP RR+RQHNGE+ GA RT +R RPW +V C+ GFP + +AL+FEW WQHP S +R A Sbjct: 5 FHCVYLLTSLDPQCEGDFYIGYTVNPLRRLRQHNGELVNGARRTSRRGRPWTIVCCVSGFPDDRAALKFEWCWQHPTASARLRHA 89
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_CRYNE (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans GN=SLX1 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21 Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 3 Query: 117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSF---------SGVANKIKLAYTMLNLPNWERYAL 461 F+ACYLL S TY+G T +P RRIRQHNGE++ GA T + RPWEM + +YGFP+ ++ALQFEWAWQ P S +R + + + V K+ +AY +++L + R L Sbjct: 28 FYACYLLRSKATANSNRTYVGSTPDPPRRIRQHNGELKQGAWSTSRHRPWEMQMIVYGFPSKLAALQFEWAWQKPELSRHLRIRGEDQEYYHIFTKDARRNWVERKVCVAYALISLTPFNRLPL 151
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_LEIMA (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania major GN=LmjF25.1330 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20 Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 3 Query: 117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKR-RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR 362 F YLLTSL P+ +G YIG++VNP RR+RQHNGE+ GA RT +R RPW +V C+ GFP + +AL+FEW WQHP S +R Sbjct: 5 FHCVYLLTSLDPQCEGDFYIGYSVNPLRRLRQHNGELVNGARRTGRRGRPWTIVCCVSGFPDDRTALKFEWCWQHPTASARLR 87 The following BLAST results are available for this feature:
BLAST of CV884600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884600 ID=CV884600; Name=CV884600; organism=Citrus sinensis; type=EST; length=843bpback to top |