CV884593

Overview
NameCV884593
Unique NameCV884593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884593 vs. ExPASy Swiss-Prot
Match: SPP3A_ARATH (Probable sucrose-phosphatase 3a OS=Arabidopsis thaliana GN=SPP3A PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 4.368e-72
Identity = 135/236 (57.20%), Postives = 171/236 (72.46%), Query Frame = 3
Query:  189 MDRLSAAARLMIVSDLDHTMVDHHDAENLSLLRFNALWEAHYRRDSLLVFSTGGSPTLYKQLRKEKPMLTPDITIMSVGTEITYG--DAMVPDNGWVEVLNQKWDKKIVTEEASRFPELKLQSETEQRPHKVSFYVDKDKAQTVTQKLSEIFKNRGLDVKIIYSGGMDLDILPQGAGKGQALAYLLRKFKSEGKVPTNTLVCGDSGNDAELFSIPEVYGVMVSNAQEELLQWHAAN 890
            MDRL    RL++V+DLD T+VDH D EN  LLRFNALWEAHYR DSLLV+ TG S + Y  LRK++P+LTPDI + SVG+EI YG  ++ V D  W   L+ KW++ IV EE  +FP+L+ Q +  Q  HKVSF+V ++ A  + + L  I + RG+DVK++YS G   D+LP+GAGK  AL YLL K   EGK P+NTLVCGDSGNDAELF+I +VYGVMVSN+ EELLQW+  N
Sbjct:    1 MDRLEGPPRLILVADLDCTLVDHDDPENNDLLRFNALWEAHYRHDSLLVYCTGRSFSSYSSLRKKRPLLTPDIAVTSVGSEIVYGGGESTVSDVVWTARLDYKWNRDIVVEETLKFPKLEPQPDKSQEEHKVSFFVGREDAVEIMKVLPGILEERGVDVKLVYSNGYAFDVLPRGAGKQGALTYLLDKLDIEGKQPSNTLVCGDSGNDAELFNISDVYGVMVSNSHEELLQWYEEN 236          
BLAST of CV884593 vs. ExPASy Swiss-Prot
Match: Y2718_NITOC (Putative HAD-like hydrolase Noc_2718 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_2718 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 64/234 (27.35%), Postives = 115/234 (49.15%), Query Frame = 3
Query:  213 RLMIVSDLDHTMVDH-HDAEN-LSLLRFNALWEAHYRRDSLLVFSTGGSPTLYKQLRKEKPMLTPDITIMSVGTEITY--GDAMVPDNGWVEVLNQKWDKKIVTEEASRFPE---LKLQSETEQRPHKVSFYVDKDKA-QTVTQKLSEIFKNRGLDVKIIYSGGMD-----LDILPQGAGKGQALAYLLRKFKSEGKVPTNTLVCGDSGNDAELFSIPEVYGVMVSNAQEELLQ 875
            ++++ SDLD T++ + H AE+  + LR   L +   R   +L + +G    L +   +E  +  PD  I  VGT I     +   P   W + ++Q W        A  F +   L+LQ   +Q  +K+S+Y   +   + +  +L++  + +G+    I+S         LDILP+ A K  A+ +L+ +   +    ++T+  GDSGND E+ +   +  ++V NAQEE+ Q
Sbjct:    4 KILLCSDLDRTLLPNGHQAESPQARLRLQRLAQ---RPGIILAYVSGRHKALIQSAIREYDLPLPDFAIGDVGTTIYQITDNQWHPWEDWSKEISQDWQGINQAGLAKLFADITPLRLQEPEKQNRYKLSYYAPPELDWENLIPQLAQRLQAQGIQASFIWSVDETAQIGLLDILPKRANKLHAIRFLMERQHFD---KSHTVFAGDSGNDLEVLA-SGLQAILVRNAQEEVRQ 230          
The following BLAST results are available for this feature:
BLAST of CV884593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SPP3A_ARATH4.368e-7257.20Probable sucrose-phosphatase 3a OS=Arabidopsis tha... [more]
Y2718_NITOC8.664e-1227.35Putative HAD-like hydrolase Noc_2718 OS=Nitrosococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884593 ID=CV884593; Name=CV884593; organism=Citrus sinensis; type=EST; length=890bp
ACTTTGGCTACGCTTCACAAAAGAAGCGCCAACGAATTTGGATCCAATTC
TCTCATCAGCATCATCTTCATTTATCATCACTCATTCATTTTTCATTCAT
CGGCATTTTTGAATTTCAGATCGATTGAGTCAGGTATTTGCTGATACGCT
GTTCGTTTGATTGTAAAGAACGAGGGAGAAAAAATATCATGGATCGACTT
AGTGCTGCTGCACGTCTCATGATAGTTTCGGATCTTGATCATACAATGGT
GGATCATCATGATGCTGAGAACCTTTCACTGCTTAGGTTTAATGCATTGT
GGGAAGCTCATTATCGTCGTGATTCTCTTTTAGTCTTCTCAACTGGAGGG
TCACCTACACTTTACAAGCAGTTGAGAAAAGAGAAACCCATGTTAACTCC
TGATATAACAATAATGTCAGTTGGAACTGAGATAACATATGGTGATGCCA
TGGTGCCAGATAATGGTTGGGTTGAAGTTCTTAATCAGAAATGGGATAAG
AAGATAGTGACAGAGGAAGCTAGCCGGTTTCCTGAACTTAAACTTCAGTC
TGAGACAGAGCAACGGCCACATAAGGTCAGCTTTTACGTTGATAAAGATA
AGGCTCAGACAGTGACTCAAAAGCTTTCAGAGATTTTCAAGAATCGCGGG
TTGGATGTTAAAATAATCTACAGTGGAGGAATGGACTTGGACATATTGCC
ACAAGGTGCTGGCAAGGGACAAGCTCTTGCATATCTACTCAGGAAGTTTA
AGAGTGAGGGAAAAGTACCAACTAACACTCTTGTCTGTGGTGATTCTGGA
AATGATGCCGAACTATTCAGCATTCCTGAAGTTTATGGAGTGATGGTTAG
CAATGCCCAAGAAGAATTGTTGCAGTGGCATGCTGCAAAT
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