EY665297

Overview
NameEY665297
Unique NameEY665297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665297_ssr492 microsatellite EY665297_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.782e-27
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 439
            A+TCGQV+ ++ PC+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.782e-27
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 2
Query:  152 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 442
            P   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.328e-27
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 439
            AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   28 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.328e-27
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 442
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.328e-27
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 442
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.155e-26
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 439
            AI+CGQV+ ++A C+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:   26 AISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.361e-26
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 442
            AI+CG VTG L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.277e-25
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 442
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.668e-25
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 442
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of EY665297 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.668e-25
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  164 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 442
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of EY665297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP2_SORBI1.782e-2760.87Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_TOBAC1.782e-2761.86Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_MAIZE2.328e-2761.96Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_GOSHI2.328e-2761.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI2.328e-2761.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_SORBI1.155e-2660.87Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP5_LENCU3.361e-2660.22Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP4_LENCU1.277e-2560.22Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU1.668e-2560.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU1.668e-2560.22Non-specific lipid-transfer protein 2 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665297 ID=EY665297; Name=EY665297; organism=Citrus sinensis; type=EST; length=1010bp
GGACCGCAGTACCGGTCGGAATTCTCGGGTCGACCCCNCGTCCGACAGAA
CCTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTCATG
GCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGC
CCCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTC
CATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGC
TGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCG
CCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCA
TCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATT
CCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTG
AGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAAAAAAATAAATA
AATAAAGAATATATATGTTAATTTCTTTTGTCCGAACAAGTCTCCACTTG
TGTGAGTCTCACTCTCATGTCATGTTTGGTATCTTTGCTTTTTAATAACA
TATAAATATGTAAACCTGATCTGGGTTTTTGAGGGATTAATTCAAGTTAT
TTGGTGGAATAACCTTAAAAAAAAAAAAAAAAAAAAAAGGGGCGGCCCGC
TCTAAAGGAAACAAACTTAATTACCCCTGGCTTGCAAAGTCCAAAACTTT
TTCTAATAGGGGCCCCCAAATTTCAATTTCCTGGGGCCCTCCTTTTTAAA
ACCGCCCGGGAAGGGGAAAAACCGGGGGGTTACCCAAAATTTATCCCCCT
TTGGACCCCCACCCCCCCTTTTTCCCCCCGTGGGGGTAAAAAAAAAAAAA
AAAAACCCCCCCCCCCAATACCCCCCCCTTCCCCAAAAAAATTTGGCCCC
CCCCCCCCGAGAAAGAGGGAGAAAAAGGGGAGCCCACCCCCCCCCCCCTT
TTAGAGGGCG
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