EY665296

Overview
NameEY665296
Unique NameEY665296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665296_ssr108 microsatellite EY665296_ssr108:108..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.773e-34
Identity = 68/127 (53.54%), Postives = 83/127 (65.35%), Query Frame = 3
Query:   42 TSLLGTFFSSKTIKATKSSRGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFINGSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTLR 422
            TS   + F SK  K+   S   F    L   F  +E+Q AT NFD + V GVGGFG VY G I+G T  VAIKR    S+QG  EFQTEI MLS+LRH HLVSLIG+C++ +EMILVY++M+ G LR
Sbjct:  483 TSRRMSIFGSKKSKSNGFS-SFFSNQGLGRYFPFTELQTATQNFDENAVCGVGGFGKVYIGEIDGGTQ-VAIKRGSQSSEQGINEFQTEIQMLSKLRHRHLVSLIGFCDENKEMILVYEYMSNGPLR 607          

HSP 2 Score: 50.0618 bits (118), Expect = 1.773e-34
Identity = 34/69 (49.28%), Postives = 39/69 (56.52%), Query Frame = 1
Query:  424 DHLYRSDN------PPLPWNQRLEICIGAPRGPPYLLLGQTRLYSFIGK-WKTTNILLEKKGGAKVSQF 609
            DHLY S        P L W QRLEICIG+ RG  YL  G  +    I +  KTTNILL++   AKVS F
Sbjct:  608 DHLYGSKENDPNPIPTLSWKQRLEICIGSARGLHYLHTGAAQ--GIIHRDVKTTNILLDENLVAKVSDF 674          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.912e-33
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 3
Query:   87 TKSSRGSFLPS---DLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFINGSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTLR 422
            T SS G+ L S   +   +  L  ++ ATN+FD +  IGVGGFG VYKG ++  T  VA+KR  P+SQQG  EF+TEI MLSQ RH HLVSLIGYC++  EMILVY++M  GTL+
Sbjct:  451 TSSSNGTTLASIASNSSYRIPLVAVKEATNSFDENRAIGVGGFGKVYKGELHDGTK-VAVKRANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLK 564          

HSP 2 Score: 46.2098 bits (108), Expect = 1.912e-33
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1
Query:  412 GLYVDHLYRSDNPPLPWNQRLEICIGAPRGPPYLLLGQTR--LYSFIGKWKTTNILLEKKGGAKVSQF 609
            G    HLY S    L W QRLEICIG+ RG  YL  G  +  ++  +   K+ NILL++   AKV+ F
Sbjct:  561 GTLKSHLYGSGLLSLSWKQRLEICIGSARGLHYLHTGDAKPVIHRDV---KSANILLDENLMAKVADF 625          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.582e-32
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  144 SEIQAATNNFDNDLVIGVGGFGNVYKGFINGSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTLR 422
            ++I +ATNNFD  L+IG GGFG VYK  +   T   AIKR +  S QG LEFQTEI +LS++RH HLVSL GYC +  EMILVY+FM +GTL+
Sbjct:  479 TDILSATNNFDEQLLIGKGGFGYVYKAILPDGTK-AAIKRGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLK 570          

HSP 2 Score: 54.6842 bits (130), Expect = 1.582e-32
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 1
Query:  412 GLYVDHLYRSDNPPLPWNQRLEICIGAPRGPPYLLLGQTRLYSFIGKWKTTNILLEKKGGAKVSQF 609
            G   +HLY S+ P L W QRLEICIGA RG  YL    +         K+TNILL++   AKV+ F
Sbjct:  567 GTLKEHLYGSNLPSLTWKQRLEICIGAARGLDYLHSSGSEGAIIHRDVKSTNILLDEHNIAKVADF 632          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.895e-26
Identity = 57/143 (39.86%), Postives = 82/143 (57.34%), Query Frame = 3
Query:   18 KDSGSRTGTSLLGTFFSSKTIKATKSSRGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFINGSTTP---------VAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTL 419
            K S S   +SL    +SS     T  + G  L S     F+ +E++ AT NF  D ++G GGFG V+KG+I+G+T           VA+K+L+ E  QG  E+ TE+  L QL H +LV L+GYC +G   +LVY+FM +G+L
Sbjct:   32 KTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSL 174          

HSP 2 Score: 40.817 bits (94), Expect = 1.895e-26
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 1
Query:  412 GLYVDHLYRSDNPPLPWNQRLEICIGAPRGPPYLLLGQTRLYSFIGKWKTTNILLEKKGGAKVSQFEPPQFGTTSGPKT 648
            G   +HL+R    PL W  R+++ IGA +G  +L   ++++      +K  NILL+ +  +K+S F   + G T G KT
Sbjct:  172 GSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLHDAKSQV--IYRDFKAANILLDAEFNSKLSDFGLAKAGPT-GDKT 247          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.468e-26
Identity = 56/143 (39.16%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   18 KDSGSRTGTSLLGTFFSSKTIKATKSSRGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFIN---------GSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTL 419
            KD GS      LG+  SS +++ +  + G  L S     FS +E+++AT NF  D V+G GGFG V+KG+I+         G+   +A+K+L  +  QG  E+  E+  L Q  H HLV LIGYC +    +LVY+FM RG+L
Sbjct:   23 KDIGS------LGSKASSVSVRPSPRTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSL 159          

HSP 2 Score: 42.3578 bits (98), Expect = 2.468e-26
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 1
Query:  412 GLYVDHLYRSDN--PPLPWNQRLEICIGAPRGPPYLLLGQTRLYSFIGKWKTTNILLEKKGGAKVSQF 609
            G   +HL+R      PL W  RL++ +GA +G  +L   +TR+      +KT+NILL+ +  AK+S F
Sbjct:  157 GSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSETRV--IYRDFKTSNILLDSEYNAKLSDF 222          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.598e-26
Identity = 72/170 (42.35%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   66 SSKTIKATKSSRGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFINGSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTLRGXXXXXXXXXXXXXXKA*NLHWCTSWASLFATGANQAVFIHREVENNQHLV 575
            S+ + K+  +S  S   + L   F   EI  ATN FD   ++GVGGFG VYKG +   T  VA+KR  P S+QG  EF+TEI MLS+LRH HLVSLIGYC++  EMILVY++MA G LR               +               TGA+Q++ IHR+V+    L+
Sbjct:  475 STASHKSATASCISLASTHLGRCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTK-VAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLPPLSWKQRLEICIGAARGLHYLHTGASQSI-IHRDVKTTNILL 642          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.082e-26
Identity = 52/132 (39.39%), Postives = 77/132 (58.33%), Query Frame = 3
Query:   51 LGTFFSSKTIKATKSSRGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFIN---------GSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTL 419
            LG+  SS +I+    + G  L S     F+ +E++AAT NF  D V+G GGFG+V+KG+I+         G+   +A+K+L  +  QG  E+  E+  L Q  H +LV LIGYC +    +LVY+FM RG+L
Sbjct:   29 LGSKSSSVSIRTNPRTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSL 160          

HSP 2 Score: 42.3578 bits (98), Expect = 7.082e-26
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 1
Query:  412 GLYVDHLYRSDN--PPLPWNQRLEICIGAPRGPPYLLLGQTRLYSFIGKWKTTNILLEKKGGAKVSQFEPPQFGTTS-----GPKTSGEYG 663
            G   +HL+R  +   PL W  RL++ +GA +G  +L   +T +      +KT+NILL+ +  AK+S F   + G T        +  G YG
Sbjct:  158 GSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSV--IYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYG 246          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.561e-25
Identity = 57/158 (36.08%), Postives = 83/158 (52.53%), Query Frame = 3
Query:   24 SGSRTGTSLLGTFFSSKTIKATKSS-----------------RGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFINGSTTP---------VAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTL 419
            S + T     GT FSS T   T SS                  G  L S     ++  +++ AT NF  D ++G GGFG VY+G+++ +T           VAIKRL  ES QG  E+++E+  L  L H +LV L+GYC + +E++LVY+FM +G+L
Sbjct:   20 SHATTNNHSNGTEFSSTTGATTNSSVGQQSQFSDISTGIISDSGKLLESPNLKVYNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEFMPKGSL 177          

HSP 2 Score: 42.3578 bits (98), Expect = 1.561e-25
Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 1
Query:  412 GLYVDHLYRSDNPPLPWNQRLEICIGAPRGPPYLLLGQTRLYSFIGKWKTTNILLEKKGGAKVSQFEPPQFG 627
            G    HL+R  N P PW+ R++I IGA RG  +L   Q  +      +K +NILL+    AK+S F   + G
Sbjct:  175 GSLESHLFRR-NDPFPWDLRIKIVIGAARGLAFLHSLQREV--IYRDFKASNILLDSNYDAKLSDFGLAKLG 243          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.584e-25
Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   12 KVKDSGSR-TGTSLLGTFFSSKTIK----ATKSSRGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFIN---------GSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTL 419
            KV    SR TG S L T   S         T  + G  L S     F+ +E++ AT NF  D ++G GGFG V+KG+I+         GS   VA+K+L+PE  QG  E+ TE+  L QL H +LV L+GYC +G   +LVY+FM +G+L
Sbjct:   28 KVSSKTSRSTGPSGLSTTSYSTDSSFGPLPTLRTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSL 177          

HSP 2 Score: 40.0466 bits (92), Expect = 7.584e-25
Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  412 GLYVDHLYRSDNPPLPWNQRLEICIGAPRGPPYLLLGQTRLYSFIGKWKTTNILLEKKGGAKVSQFEPPQFGTT 633
            G   +HL+R    PL W  R+++ +GA +G  +L   ++++      +K  NILL+    AK+S F   + G T
Sbjct:  175 GSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTFLHEAKSQV--IYRDFKAANILLDADFNAKLSDFGLAKAGPT 246          
BLAST of EY665296 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.729e-24
Identity = 71/187 (37.97%), Postives = 104/187 (55.61%), Query Frame = 3
Query:   24 SGSRTGTSLLGTF---FSSKTIKATKSSRGSFLPSDLCTQFSLSEIQAATNNFDNDLVIGVGGFGNVYKGFINGSTTPVAIKRLEPESQQGALEFQTEIGMLSQLRHLHLVSLIGYCNDGREMILVYDFMARGTLRGXXXXXXXXXXXXXXKA*NLHWCTSWASLFATGANQAVFIHREVENNQHLV 575
            S   TG + L  F    +S+T + T SS G         + S +E+Q+ TNNFD  LVIGVGGFG V++G +  +T  VA+KR  P S+QG  EF +EI +LS++RH HLVSL+GYC +  EMILVY++M +G L+               +               TG++Q + IHR++++   L+
Sbjct:  442 SSESTGWTPLRRFRGSSNSRTTERTVSSSGYHT-----LRISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTK-VAVKRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGSTNPPLSWKQRLEVCIGAARGLHYLHTGSSQGI-IHRDIKSTNILL 621          
The following BLAST results are available for this feature:
BLAST of EY665296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
Y5613_ARATH1.773e-3453.54Probable receptor-like protein kinase At5g61350 OS... [more]
Y5597_ARATH1.912e-3354.78Probable receptor-like protein kinase At5g59700 OS... [more]
Y2232_ARATH1.582e-3259.14Probable receptor-like protein kinase At2g23200 OS... [more]
APK2B_ARATH1.895e-2639.86Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK1A_ARATH2.468e-2639.16Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
THE1_ARATH6.598e-2642.35Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
APK1B_ARATH7.082e-2639.39Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
CX32_ARATH1.561e-2536.08Probable serine/threonine-protein kinase Cx32, chl... [more]
APK2A_ARATH7.584e-2540.67Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y5241_ARATH4.729e-2437.97Probable receptor-like protein kinase At5g24010 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665296 ID=EY665296; Name=EY665296; organism=Citrus sinensis; type=EST; length=932bp
CACGCGTCCGGAAAGTCAAGGACTCGGGTTCCCGTACAGGTACTTCACTT
TTGGGGACTTTTTTTTCTTCTAAGACTATCAAGGCAACCAAGTCATCACG
CGGCTCATTCCTTCCTTCCGATCTTTGTACCCAATTTTCACTATCTGAAA
TCCAAGCGGCTACAAACAACTTCGACAATGATCTCGTAATTGGAGTTGGA
GGGTTTGGTAATGTCTACAAAGGCTTCATCAATGGCAGCACTACCCCTGT
TGCCATTAAACGACTGGAACCAGAGTCGCAACAGGGCGCCCTGGAATTCC
AAACTGAGATAGGAATGCTCTCGCAGCTCCGGCATCTTCACTTAGTCTCT
CTCATCGGCTATTGCAACGATGGCAGGGAGATGATCCTTGTATACGATTT
CATGGCTCGTGGGACTCTACGTGGATCATCTCTACCGTAGCGACAATCCT
CCTCTTCCATGGAATCAAAGGCTTGAAATCTGCATTGGTGCACCTCGTGG
GCCTCCCTATTTGCTACTGGGGCAAACCAGGCTGTATTCATTCATCGGGA
AGTGGAAAACAACCAACATCTTGTTGGAAAAAAAAGGGGGGGCCAAGGTT
TCCCAATTCGAACCCCCCCAATTTGGAACAACTTCCGGGCCCAAAACCTC
TGGGGAGTACGGTTGTAAAGGGGGAGGCGCGGAAAACTAAAAATCCGGAA
AAACAACCCGACTTCCCACAGTTTAATGGGAAAAACCTAGAACCCACACC
CCTTCCGGGGGGTTGGGGTGTGTCGAAAATTATTGGGGGGGCCCCGGCCC
CCCCATTTTCCCGGGGGAAAACACAAAAAAAAAAAAAAAAATAGGAAGGT
TAACAGTTTGTTGGGGGGGGGCACCCAATGGTATTATAATCAAGAGGGAG
AAAAATTTTTTGTAAAAGAAATGTGTTGTAAC
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