CV884545

Overview
NameCV884545
Unique NameCV884545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884545 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.724e-22
Identity = 53/103 (51.46%), Postives = 65/103 (63.11%), Query Frame = -2
Query:   10 GSIVAVFGLGTVXXXXXXXXXXXXASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 318
            GS  AVFGLG V            ASR+I +DI+  KF +AK  G T+ +NPKDH +PI +VL+ +T  GVDYSFE IG +  M AAL  CH  +G SVIVGV
Sbjct:    3 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINSDKFAKAKELGATDCINPKDHKEPIHKVLIGMTGYGVDYSFEVIGRIETMVAALASCHYNYGVSVIVGV 105          
BLAST of CV884545 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-14
Identity = 54/155 (34.84%), Postives = 71/155 (45.81%), Query Frame = -2
Query:   10 MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 471
            +G   F+  T+VH     K+DP A      LLGCGV  GLGA  NT  V  G  VAV G G V            A+++I +D D KK + A   G T  VN  + D  + + +  LT G G D   + +G     + A        GT V+VGV
Sbjct:  128 LGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVGRPETWKQAFYARDLA-GTVVLVGV 279          
BLAST of CV884545 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = -2
Query:   55 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAAL 474
            F G S+F+ Y + ++ +  K+    PL+ +  LGCG+ TG G+V N      GS +A+FG G V             + +I +D+   + + A   G T  +NP  +D PI+ +     D GV Y  E  G  +V+  A+
Sbjct:  135 FFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGSVLNALNPPAGSAIAIFGAGAVGLSAVMAAVVAGCTTIIAVDVKENRLELASELGATHIINPAAND-PIEAIKEIFAD-GVPYVLETSGLPAVLTQAI 272          
BLAST of CV884545 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 42/94 (44.68%), Postives = 49/94 (52.13%), Query Frame = -2
Query:  178 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXASRVIGIDIDPKKFDRAKNFGVT 459
            TFS Y VVH  SV KIDP  P +  CL+GCGV TG G+   TA V PG  VA+ GLG V            A  V  ++    K D+A  FG T
Sbjct:  140 TFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGAT 233          
BLAST of CV884545 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 42/94 (44.68%), Postives = 49/94 (52.13%), Query Frame = -2
Query:  178 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXASRVIGIDIDPKKFDRAKNFGVT 459
            TFS Y VVH  SV KIDP  P +  CL+GCGV TG G+   TA V PG  VA+ GLG V            A  V  ++    K D+A  FG T
Sbjct:  140 TFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGAT 233          
BLAST of CV884545 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 52/159 (32.70%), Postives = 78/159 (49.06%), Query Frame = -2
Query:   10 FMGTSTFSQYTVVHDVSVAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 474
            F G S+FS   +  + ++ KID     AP++ +  LGCGV TG GAV  +  V  G    V G G V             SR+I  +    K ++A   G TE ++P + +  + + +  +T+G G DY+ EC G VSVM  A++      G   +VGV
Sbjct:  112 FFGQSSFSSMAMAREHNLVKIDALVDDAPIELLGPLGCGVQTGAGAVMISLDVRAGRSFLVLGGGAVGLSAVMAAKLRGCSRIIVSEPSAAKREQALALGATEVIDPLNEN--LVERVQQITEGQGCDYALECTGLVSVMEQAIDSMAMR-GQLAVVGV 267          
The following BLAST results are available for this feature:
BLAST of CV884545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH1_ANAPL4.724e-2251.46Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
FADH_AMYME2.126e-1434.84NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
XYLB_PSEPU4.735e-1430.00Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
ADHB_MYCTU2.350e-1344.68Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO2.350e-1344.68Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
TERPD_PSESP1.166e-1232.70Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884545 ID=CV884545; Name=CV884545; organism=Citrus sinensis; type=EST; length=478bp
TGATGCAGCAACACCCACAATAACTGATGTTCCCCAGCCCTTGTGACAGC
ATTCCAAAGCTGCCCTCATCACAGAGACATTGCCAATGCATTCAAAACTA
TAGTCAACACCACCATCCGTGAGATCGACAAGGACCTGCTGAATGGGTTT
GTCATGGTCCTTGGGATTTACAAATTCAGTAACTCCAAAATTCTTTGCTC
TATCAAACTTTTTTGGGTCAATATCTATACCAATAACACGTGAAGCTCCA
GCTGCCTTTGCACCCTCTGCCACAGCAAGGCCAACAGTCCCAAGGCCAAA
AACAGCAACTATAGAACCCGGCTCTACTTTTGCAGTGTTCCAAACTGCTC
CAAGACCAGTAGGAACACCACAGCCAAGAAGGCATACTTTGTCCAAAGGA
GCTTGTGGGTCAATCTTTGCAACACTAACATCATGCACAACTGTGTACTG
GCTAAATGTTGAGGTTCCCATGAAGTGA
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