CV884532

Overview
NameCV884532
Unique NameCV884532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_DROME (Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.861e-49
Identity = 90/171 (52.63%), Postives = 125/171 (73.10%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            I+TDF+++  I  R+F+GL+GL TD  T+  RL+FR  LY+ RE R+M P+ F++++S+ LYE RFGPYF +PV+AGL  +  +PFIC MD IG      DFVVAGT  E LYG CE ++KPD+EPD+LFE ++Q+++++ DRD +SGWG  VYI+   +I ER LK RMD
Sbjct:   35 ISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKITERTLKTRMD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 6.861e-49
Identity = 95/171 (55.56%), Postives = 129/171 (75.44%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   35 VTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_YEAST (Proteasome component PUP3 OS=Saccharomyces cerevisiae GN=PUP3 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.749e-44
Identity = 85/171 (49.71%), Postives = 126/171 (73.68%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            ++  F++I   +  +F+G++GLATD  TL +   ++  LY+L+EER ++PETF  LVS+ LYE+RFGPYF  PV+AG++ +  KPFI   D IG  + AKDF+V+GTA + L+G CE++++P++EP++LFET+SQALL++ DRD LSGWG  VYI+   E+ +R LK R D
Sbjct:   36 VSNKFEKIFH-YGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.480e-43
Identity = 75/170 (44.12%), Postives = 120/170 (70.59%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            IATD +++ K+ D++++GL+G  +D++T+ ++++FR  LY+LRE R++KP+  + ++S L Y+ RFG YF +P++AGL D +KP+IC MD+IG     +DFV  GT  E L G CE  ++ +M+PDELFE  +Q++LS ++RD  SGWG  VY +T  ++    +K RMD
Sbjct:   35 IATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVVYTITKDKVNVSTIKARMD 204          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_TRYBB (Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.297e-39
Identity = 80/171 (46.78%), Postives = 121/171 (70.76%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            I+ +  ++  I+D + +GL+GL TD QT  Q++ FR ++Y+LREERD+  + FA+LVS++LYE RFGP+F +PVI  +  +  + ++C  D IGA    +D+V AGT  ESL+G CEA+++P +EP+ELFE  +QA+LS+ DRD LSG+G    IVT  ++  R++KGR D
Sbjct:   35 ISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVYLCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYGAVAAIVTKDKLVTRLIKGRKD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 61/150 (40.67%), Postives = 95/150 (63.33%), Query Frame = -1
Query:  432 QRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 881
            +RI ++     +GL+GL TD  T Y+++  +  LY L+E+R+++P   A ++S+ LY+ RFGPYF  P+IAG   + KP++  MD+IG  +   +F +AGTA + L G CE   KPDM  DE+   + Q + S+ +RD  SGWG HV ++
Sbjct:   42 ERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGWGAHVVVL 191          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.482e-15
Identity = 52/154 (33.77%), Postives = 78/154 (50.65%), Query Frame = -1
Query:  420 QRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 881
            ++I +I DR+ +  +G   D+Q L + +     LY++R ER       A+L S LL   R+ PY  Q +I G+  E K  I ++D IG     KD V  G+   + YG  E  F P++  DE  E   +A+ S++ RD  SG G  V  +T  E
Sbjct:   43 KKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDE 195          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 44/156 (28.21%), Postives = 81/156 (51.92%), Query Frame = -1
Query:  414 QRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIK 881
            +++ KI D + + ++G   D+Q + + L+   KLY++R  R++ P   A+L+S +L+  R  P+  Q +I G    +   + ++D +G     K F   G+     YG  EA +  DM  +E  +    AL S+++RD  SG G  + ++T   +K
Sbjct:   38 KKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVK 193          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 47/158 (29.75%), Postives = 80/158 (50.63%), Query Frame = -1
Query:  420 ATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 893
            ATD  +I KI + +   ++G   D+Q+L + L     LY++R    +  E  A+L + +L+  RF P+  Q ++ G+ DE+   I ++D  G   +   FV  G+     YG  E  +  ++  DE  +   +A+ S+++RD  SG G  V  VT  E
Sbjct:   39 ATD--KIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGV-DENGAKIYSLDPSGGM-IPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEE 192          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 38/161 (23.60%), Postives = 82/161 (50.93%), Query Frame = -1
Query:  396 RISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 878
            ++ ++HDR+F  ++G   D+Q + +   F+   + ++ E     +  AS++  L Y  +        + AG   +  P + T+ ++G   L++ F + G+    +YG  +A +KPDM  +E  +  + AL  ++ RD +SG   H+ ++T   ++  ++ G
Sbjct:   50 KLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPG 208          
The following BLAST results are available for this feature:
BLAST of CV884532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PSB3_DROME6.861e-4952.63Proteasome subunit beta type-3 OS=Drosophila melan... [more]
PSB3_BOVIN6.861e-4955.56Proteasome subunit beta type-3 OS=Bos taurus GN=PS... [more]
PSB3_YEAST1.749e-4449.71Proteasome component PUP3 OS=Saccharomyces cerevis... [more]
PSB3_CAEEL1.480e-4344.12Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSB3_TRYBB1.297e-3946.78Proteasome subunit beta type-3 OS=Trypanosoma bruc... [more]
PSB3_GIALA5.835e-3240.67Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSMB_ARCFU6.482e-1533.77Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA3.217e-1428.21Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_METTH3.329e-1129.75Proteasome subunit beta OS=Methanobacterium thermo... [more]
PB6LB_SALSA5.678e-1123.60Proteasome subunit beta type-6-B like protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008A10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884532 ID=CV884532; Name=CV884532; organism=Citrus sinensis; type=EST; length=896bp
TTTTTTTTTTTTTTTTTGATTTTCAAATGCTATTGTAAAAAGCTTTATTA
GAGTATCCAATTTTCAAATACAGTAATCTGTTCTAAAATGCTTTACCCAG
CATATTTTCAGTTGTTTGACAACCCCAAACAAGCACTATATAGCAAGCGC
AAAAGATCAAAACCTCAATTGATAGAAACACTTTCATCCATCCAGATAAC
CGCAAGCCCACGAACTTGGTCAATTCAGTTTGAAACTATTTCAGAGTACA
ACAATTTGAGAGCTCTTAAACAACATTCTTCATAAACAAATAAAAGTCAA
GTTCAAGTCTACGGTCTTCTAATTAAAAAATACTGAAGAGTGAACGCAAC
AGAAGGGGTGGCTTTCAGCACTGCAGTTATAGATCAATCCATCCTTCCCT
TCAAGATTCTTTCCTTTATTTCAGTTGGTGTTACAATGTAGACATGTCCT
CCCCAACCACTCAAACAGTCACGGTCAACAGATGATAACAAAGCTTGAGA
TACAGTTTCAAACAACTCATCGGGTTCCATATCAGGCTTGAACATTGCCT
CACAGGCACCATAAAGAGACTCTCCAGCAGTTCCAGCAACAACAAAATCT
TTTGCAAGCTCCTTGGCTCCAATTGAGTCCATTGTGCAGATAAAGGGCTT
GTCTTCATCACTCAATCCAGCAATAACAGGTTGACAGAAGTAAGGGCCAA
ACCTTTTCTCATAAAGCAAAGCAGAGACTAAGCTAGCAAAAGTTTCAGGC
TTCATGTCCCTTTCCTCTCGCAGCTGATACAATTTGTGACGAAACACCAG
CCTTTGATACAAGGTCTGGGAATCAGTGGCGAGTCCAGAGAGGCCGATAA
AAAGGCGATCGTGAATTTTGGAAATTCGCTGAAAATCAGTGGCTAT
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