CV884532

Overview
NameCV884532
Unique NameCV884532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 49/184 (26.63%), Postives = 81/184 (44.02%), Query Frame = -1
Query:  387 DFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 887
            D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P                  +  D     V    +S+ +RD  +G    + IVT   I+E  +  R D
Sbjct:   67 DSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 38/161 (23.60%), Postives = 81/161 (50.31%), Query Frame = -1
Query:  396 RISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 878
            ++ ++HDR+F  ++G   D+Q + +   F+   + ++ E     +  AS++  L Y  +        + AG   +  P + T+ ++G   L++ F + G+    +YG  +A +KPDM  +E  +    AL  ++ RD +SG   H+ ++T   ++  ++ G
Sbjct:   50 KLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPG 208          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 49/184 (26.63%), Postives = 82/184 (44.57%), Query Frame = -1
Query:  387 DFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 887
            D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P ++                  D     V    +S+ +RD  +G    + IVT   I+E  +  R D
Sbjct:   66 DSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
The following BLAST results are available for this feature:
BLAST of CV884532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PSB1_HUMAN7.416e-1126.63Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PB6LA_SALSA7.416e-1123.60Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB1_MOUSE9.685e-1126.63Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008A10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884532 ID=CV884532; Name=CV884532; organism=Citrus sinensis; type=EST; length=896bp
TTTTTTTTTTTTTTTTTGATTTTCAAATGCTATTGTAAAAAGCTTTATTA
GAGTATCCAATTTTCAAATACAGTAATCTGTTCTAAAATGCTTTACCCAG
CATATTTTCAGTTGTTTGACAACCCCAAACAAGCACTATATAGCAAGCGC
AAAAGATCAAAACCTCAATTGATAGAAACACTTTCATCCATCCAGATAAC
CGCAAGCCCACGAACTTGGTCAATTCAGTTTGAAACTATTTCAGAGTACA
ACAATTTGAGAGCTCTTAAACAACATTCTTCATAAACAAATAAAAGTCAA
GTTCAAGTCTACGGTCTTCTAATTAAAAAATACTGAAGAGTGAACGCAAC
AGAAGGGGTGGCTTTCAGCACTGCAGTTATAGATCAATCCATCCTTCCCT
TCAAGATTCTTTCCTTTATTTCAGTTGGTGTTACAATGTAGACATGTCCT
CCCCAACCACTCAAACAGTCACGGTCAACAGATGATAACAAAGCTTGAGA
TACAGTTTCAAACAACTCATCGGGTTCCATATCAGGCTTGAACATTGCCT
CACAGGCACCATAAAGAGACTCTCCAGCAGTTCCAGCAACAACAAAATCT
TTTGCAAGCTCCTTGGCTCCAATTGAGTCCATTGTGCAGATAAAGGGCTT
GTCTTCATCACTCAATCCAGCAATAACAGGTTGACAGAAGTAAGGGCCAA
ACCTTTTCTCATAAAGCAAAGCAGAGACTAAGCTAGCAAAAGTTTCAGGC
TTCATGTCCCTTTCCTCTCGCAGCTGATACAATTTGTGACGAAACACCAG
CCTTTGATACAAGGTCTGGGAATCAGTGGCGAGTCCAGAGAGGCCGATAA
AAAGGCGATCGTGAATTTTGGAAATTCGCTGAAAATCAGTGGCTAT
back to top