CV884526

Overview
NameCV884526
Unique NameCV884526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.457e-42
Identity = 86/166 (51.81%), Postives = 109/166 (65.66%), Query Frame = -2
Query:  297 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 794
            +V+FD+ I     GRIVM L    VP+TAENFRALCTG++G G       Y    FHR+IP FM Q           G+SIYG KF DENF+L+H G G+LSMAN+GP+TNGSQFFI T    WLDG+HVVFG+V+ G +VV K+E+ G ++G  K  V ++  GE
Sbjct:   19 RVFFDIRIGNADRGRIVMELRSDIVPRTAENFRALCTGDRGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGE 177          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.457e-42
Identity = 89/158 (56.33%), Postives = 106/158 (67.09%), Query Frame = -2
Query:  327 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGK--PLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPK 794
            K YFD+ I G P GRIV  L+   VPKTAENF  LC G+ G+ KS    PL YKGS FHR+I  FM+Q           GESIYGEKF DENF++KH  P LLSMANAGP+TNGSQ FIT V T  LDG+HVVFG+V+ G  +V  +E +  ++GT K
Sbjct:    5 KAYFDISIGGTPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDK 162          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.127e-42
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = -2
Query:  297 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 809
            K+    V+FDV   G+P GRI+M LF   VP+TAENFRALCTGEKG G       +K S FHR++P F+ Q           G+SIYG+KF DENF LKHTGPGLLSMAN G +TN SQFFIT      LD +HVVFG V  GMD V K+E+ G   G+   ++ + + G+
Sbjct: 2889 KDTNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQ 3052          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.708e-41
Identity = 93/174 (53.45%), Postives = 106/174 (60.92%), Query Frame = -2
Query:  300 LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGK--PLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSG 812
            + E   K +FD+ I GKPAGRIV  L+   VPKTAENF  LC G  G  KS    PL YKGS FHR+I SFM Q           GESIYGEKF DENF LKH  P LLSMANAG +TNGSQ FIT V T  LDG+HVVFG+V+ G  +V  +E         P  +V + D G
Sbjct:    1 MSETRPKTFFDISIGGKPAGRIVFELYSDVVPKTAENFLKLCEGNSGFAKSKPDIPLSYKGSIFHRVIKSFMCQFGDFTNFNGTGGESIYGEKFEDENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKIEDCG 174          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.033e-41
Identity = 98/186 (52.69%), Postives = 114/186 (61.29%), Query Frame = -2
Query:  300 ITNKVYFDVEIAG-------KP-------AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVL--SGMDVVYKVEAEGRQNGTPK--SKVVVADSG 803
            I +KV+FD+E  G       KP       +GRI   L+   VPKTA NF+ LCTG+ G G       YKGS+FHRIIP FMLQ           G+SIYGEKF DENF  KH  PGLLSMANAGP+TNGSQFF+TTV TSWLDGRHVVFG+V     M VV  +EA G  +G  +   K  + D G
Sbjct:   43 IMSKVFFDLEWEGPVLGPNNKPTSEIKAQSGRINFTLYDDVVPKTARNFKELCTGQNGFG-------YKGSSFHRIIPEFMLQGGDFTRGNGTGGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCG 221          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 7.880e-41
Identity = 88/171 (51.46%), Postives = 107/171 (62.57%), Query Frame = -2
Query:  297 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 809
            KE    V+FDV   G+P GRI M LF   VP+TAENFRALCTGEKG G       +K S FHR+IP F+ Q           G+SIYG+KF DENF +KHTGPGLLSMAN G +TN SQF IT      LD +HVVFG V  GMD V K+E+ G   G+   ++ + + G+
Sbjct: 3060 KETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQ 3223          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.755e-40
Identity = 89/166 (53.61%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  297 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 794
            K +FD++   +  GRI+  LF   VP T  NFR LCT +   G       YKGS FHRIIP FM Q           G+SIYG KF DENF  KH    L SMANAGP+TNGSQFFITTV  SWLDG+HVVFGKV+SG+DVV K+E+ G  +G P  K+++ D GE
Sbjct:    4 KAFFDIKAGDERLGRIIFELFND-VPDTTRNFRELCTHKNNFG-------YKGSVFHRIIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFSL-SMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.755e-40
Identity = 90/173 (52.02%), Postives = 110/173 (63.58%), Query Frame = -2
Query:  297 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 809
            K+   +V+ DV I G  AGRIVM L+    P+T  NF  LCTG  G GK SGKPLHYKGSTFHR+I +FM+Q           GESIYG  F DE F +KH  P ++SMAN GP+TNGSQFFITT     L+  HVVFGKV+SG +VV K+E  +      P + VV+ + GE
Sbjct:    3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGE 175          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.293e-40
Identity = 87/163 (53.37%), Postives = 106/163 (65.03%), Query Frame = -2
Query:  300 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 788
            YFD+ IA +PAGR+   LF   VPKTA NF+ LC G+K   ++G  L Y GS+FHR I  FMLQ           GESIYGEKF DENF+LKH  P LLSMANAGP TNGSQFFITTV T  LDG+HVVFG+V+    +V ++E     +  P   V ++ +G
Sbjct:    7 YFDITIANEPAGRLTFELFDDVVPKTANNFKHLCIGDK-TNEAGVKLAYAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAG 168          
BLAST of CV884526 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.994e-40
Identity = 87/167 (52.10%), Postives = 109/167 (65.27%), Query Frame = -2
Query:  297 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEK-FPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGE 791
            V+ D+ I G+  GRI + LF   VPKTAENFR  CTGE  +G + KP+ YK STFHRII  FM+Q             +I+  + FPDENF LKH  PGLLSMANAG D+NG QFFITTV   +LDG+HVVFG+V+ G D+V ++E+     N  PKS V + + GE
Sbjct:    7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGET-LGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGE 172          
The following BLAST results are available for this feature:
BLAST of CV884526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
PPIE_SCHJA5.457e-4251.81Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPID_CANGA5.457e-4256.33Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
RBP2_MOUSE7.127e-4251.46E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPID_KLULA2.708e-4153.45Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
CYPH_NEUCR6.033e-4152.69Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
RBP2_HUMAN7.880e-4151.46E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
PPIA_SCHMA1.755e-4053.61Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
CYP1_BRUMA1.755e-4052.02Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPID_CRYNE2.293e-4053.37Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIH_SCHPO2.994e-4052.10Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008A07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884526 ID=CV884526; Name=CV884526; organism=Citrus sinensis; type=EST; length=825bp
TTTTTTTTTTTTTTTTTGATATGGATTCCCGCATTCGCGTACTTATTTCG
GGTGCTTCCATAAGCCTTCTTCTACACAAGTTAGAAAAGAAACACTAAAT
GTGATGAGATAGCTATCAGAGAAAAGGATCCCCTTAAAATGAAGCACCAG
CTTGGCAAACAACCTAGGACATTTTAAAATGTCTATTACATGATAAATAG
GCAAATTATGAGTATCTTCATGAAGGTTGAAAAGACGAGAGGACTAAAAA
GGGGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCA
CCGCTGTCTGCAACGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCC
TTCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAA
ATACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAG
AATTGTGAACCATTGGTGTCTGGACCAGCATTTGCCATTGACAAAAGCCC
TGGGCCAGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCAT
AAATTGACTCTCCACCTCTTCCATCACCAAGAGTGAAATCACCTCCTTGA
AGCATAAAGCTGGGAATAATCCTATGGAACGTACTTCCCTTGTAGTGGAG
TGGCTTCCCGCTCTTGCCAATCCCTTTCTCCCCTGTGCACAAAGCTCGGA
AATTTTCTGCAGTTTTAGGGACTGCCTTTCCAAAGAGACCCATTACAATA
CGTCCGGCAGGTTTTCCAGCAATCTCAACGTCAAAGTAAACTTTGTTTGT
GATTTCTTTCAAATTCTGATCCGAT
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