CV884518

Overview
NameCV884518
Unique NameCV884518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.742e-43
Identity = 97/214 (45.33%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   55 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG---SGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSG 687
            I  +  +LIG+TPLV LN +     A++  KLE   P  SVKDR  Y MI +AE  GL+ PG SV+IEPTSGNTGIGLA  AAA+ Y+ I+ MP +M+ ER  +L+A+GAE+VLT   + M G+++KA+E+  + PN+Y+  QF+N ANP  H +TT PE+ +     G  + A V+            + LKE  P+I ++ +EP  SPVLSG
Sbjct:    4 IVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSYIPMQFDNTANPDAHRKTTAPEIARAIEEIGKPLGAFVASSGTGGTITGTGEALKELFPDITVHVVEPAGSPVLSG 216          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 92/205 (44.88%), Postives = 123/205 (60.00%), Query Frame = 1
Query:   73 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSG 687
            + IGNTPLV L  +     + +  KLE   P  SVKDR   SMI +AE +G I PG+ VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR  +RA+GAEL+L    +GM+GA   A E +A      +L QF NP NP  HY TTGPE+W+ +GGRI   VS            +F++E++  + + G++P E   + G
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG 208          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 91/205 (44.39%), Postives = 121/205 (59.02%), Query Frame = 1
Query:   73 ELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSG 687
            + IGNTPLV L  +     + I  KLE   P  SVKDR   SMI +AE +G I PG+ VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR  +RA+GAEL+L    +GM+GA   A   +++     +L QF NP NP  HY TTGPE+W+ + GRI   VS            +FL+E+   + + G++P E   + G
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLA-LAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGLQPEEGSSIPG 208          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 88/211 (41.71%), Postives = 123/211 (58.29%), Query Frame = 1
Query:   55 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSG 687
            +  D+TELIGNTPL+ L N        + AKLEMM P  S+KDR+G  +I DA   G + PG  V+IE T+GNTGIGLA  A     + I  +P   S E++ I++A GA ++ T    GM+GA+QKA ++  +  N+Y + QF+N  NP  +Y+T GPE+W+   G I   V+             FLKEKNP +K   +EP  S +L+G
Sbjct:    3 VITDITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWEALDGNIHTFVAGAGSGGTFAGTASFLKEKNPAVKTVIVEPVGS-ILNG 211          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 85/207 (41.06%), Postives = 123/207 (59.42%), Query Frame = 1
Query:   67 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSG 687
            + + +GNTPLV L  +       +  KLE   P  SVKDR   SMI+ AE +G I PG++ LIE TSGNTGI LA  AA K Y++I+ MP + + ER+  + A+GAEL+L    +GM+GA   A++ L +     +L QF N  NP+ HY +TGPE+W+ +GG I   VS            ++LKE+NP +++ G++P E   + G
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADK-LQREGRGKVLDQFANGDNPEAHYHSTGPEIWQQTGGSITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPMEGSAIPG 212          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 85/210 (40.48%), Postives = 117/210 (55.71%), Query Frame = 1
Query:   55 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLS 684
            + + V+ELIGNTP+++L          + AK E + P  S+KDR  + MI DA     I   ++ ++E TSGNTGI LA + A    + I  MP SMSLERR ++  FGA L LT    GMKGAV KA EIL  TPN++M+ QFEN +N   H + T  E+ +     +D  V+            + LKEK   + + G+EP  SP+LS
Sbjct:    3 VHEKVSELIGNTPIIHLKKFG----INVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQ-DTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILRDLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLS 207          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.634e-35
Identity = 88/215 (40.93%), Postives = 119/215 (55.35%), Query Frame = 1
Query:   43 ESSNIAKDVTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP---AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTES 672
            +S  I  D+   IGNTP+V +N I    G    + AK E      SVKDRI   MI DAE  G + PG+++ IEPTSGNTGIGLA  AA K YR II MP  MS+E+  +LRA GAE+V T         +  V  A  +  + PN+++L Q+ N +NP  HY+ T  E+ +   G++D LV+            + LKEK P  K+ G++P  S
Sbjct:   69 KSPKILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKVDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGS 282          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.634e-35
Identity = 88/215 (40.93%), Postives = 121/215 (56.28%), Query Frame = 1
Query:   43 ESSNIAKDVTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP---AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTES 672
            +S  I  D+ + IG+TP+V +N I    G    + AK E      SVKDRI   MI DAE  G + PG+++ IEPTSGNTGIGLA  AA K YR II MP  MSLE+  +LRA GAE+V T         +  V  A  +  + PN+++L Q+ N +NP  HY+TT  E+ +   G++D LV+            + LKEK P  ++ G++P  S
Sbjct:   72 KSPKILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNASNPLAHYDTTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCQIIGVDPEGS 285          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.640e-35
Identity = 88/215 (40.93%), Postives = 119/215 (55.35%), Query Frame = 1
Query:   43 ESSNIAKDVTELIGNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP---AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTES 672
            +S  I  D+   IGNTP+V +N I    G    + AK E      SVKDRI   MI DAE  G + PG+++ IEPTSGNTGIGLA  AA K YR II MP  MS+E+  +LRA GAE+V T         +  V  A  +  + PN+++L Q+ N +NP  HY+ T  E+ +   G++D LV+            + LKEK P  K+ G++P  S
Sbjct:   69 KSPKILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGS 282          
BLAST of CV884518 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 81/206 (39.32%), Postives = 121/206 (58.74%), Query Frame = 1
Query:   55 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEP 663
            I  ++ + IG TPLV +N + +     + AK E      SVKDRIG+ MI DAE  G I  G++ LIEPTSGNTGIGLA  AA K Y++IIT+P  MS E+  +L+A GAE++ T         +  +  A+++ ++ PN+++L Q+ NP+NP  HY+ T  EL +   G+ID +V             + +KE+ PN  + G++P
Sbjct:   32 IMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPSNPLAHYDGTAEELLEQCEGKIDMIVCTAGTGGTITGIARKIKERLPNCIVVGVDP 236          
The following BLAST results are available for this feature:
BLAST of CV884518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_BACSU4.742e-4345.33Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSM_ECOLI8.371e-4044.88Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSM_SALTY9.256e-3944.39Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
MCCA_BACSU2.062e-3841.71O-acetylserine dependent cystathionine beta-syntha... [more]
CYSM_PSEAE2.693e-3841.06Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSM_CAMJE1.251e-3540.48Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CBS_RAT1.634e-3540.93Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_RABIT1.634e-3540.93Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_MOUSE3.640e-3540.93Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CBS_DICDI1.383e-3439.32Cystathionine beta-synthase OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008A02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884518 ID=CV884518; Name=CV884518; organism=Citrus sinensis; type=EST; length=689bp
CCACCTTCTACACAAGTCAAGTAATCATAAAACATGGCGGTTGAGAGTAG
CAACATTGCAAAAGATGTTACAGAATTAATTGGCAATACACCATTGGTGT
ATCTCAACAATATTGTCAATGGGTGTGTTGCCCGCATTGCTGCTAAGCTA
GAGATGATGGAACCGTGCTCTAGTGTCAAGGACAGGATTGGTTATAGCAT
GATTTCTGATGCGGAGGCGAAGGGTCTAATAACACCAGGGGAGAGTGTAC
TCATTGAACCTACAAGTGGAAATACTGGGATTGGTTTGGCGTTCATGGCG
GCAGCCAAGCAATACAGGCTTATCATTACAATGCCAGCTTCAATGAGTCT
TGAAAGAAGAATCATTCTTCGAGCATTTGGAGCTGAATTAGTTCTCACCG
ATCCTGCTAAGGGGATGAAAGGGGCTGTTCAGAAGGCAGAGGAGATTCTG
GCTAAAACCCCCAATGCTTACATGCTGCAGCAATTTGAAAACCCTGCCAA
TCCAAAGATCCATTATGAAACTACTGGACCAGAGTTATGGAAAGGGTCAG
GAGGGAGAATCGATGCCCTTGTTTCCGGAATTGGTACTGGTGGCACAATA
ACAGGTGCAGGAAAATTTCTCAAAGAGAAGAACCCCAACATAAAGCTCTA
TGGTATAGAGCCAACTGAAAGTCCTGTTCTATCTGGAGG
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