CX043389

Overview
NameCX043389
Unique NameCX043389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043389 vs. ExPASy Swiss-Prot
Match: RS11_HAEDU (30S ribosomal protein S11 OS=Haemophilus ducreyi GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  128 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 451
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX043389 vs. ExPASy Swiss-Prot
Match: RS11_GLUDA (30S ribosomal protein S11 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 2
Query:   98 PAVRDGEH---VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 451
            P +R  E    + GVAH+ ++FN+T I ++D  G        G    K  R +S+PYAA +AA+D  ++ +E G+  L I++               +SALRAL   G  I  I D+TP+P
Sbjct:    7 PRIRKKERKNIISGVAHVLSTFNNTMITISDAQGNAIAWSSAGAQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGSGRESALRALQAVGFSITSIRDMTPVP 118          
BLAST of CX043389 vs. ExPASy Swiss-Prot
Match: RS11_GEOMG (30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  128 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 451
            GVAHI A+FN+T I +TD +G        GG   K  R +S+P+AA +AA+D +++ ++ G+ ++ + ++              +SALRAL  +G  +  I DVTPIP
Sbjct:   21 GVAHIQATFNNTIITITDPAGNVVAWSSAGGKGFKGSR-KSTPFAAQVAAEDCAKKAQDHGMRSVEVYVKG--------PGSGRESALRALQAAGFHVNFIRDVTPIP 119          
BLAST of CX043389 vs. ExPASy Swiss-Prot
Match: RS11_AZOVD (30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  122 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 451
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117          
BLAST of CX043389 vs. ExPASy Swiss-Prot
Match: RS11_ACTPJ (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  128 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 451
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX043389 vs. ExPASy Swiss-Prot
Match: RS11_ACTP7 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  128 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 451
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX043389 vs. ExPASy Swiss-Prot
Match: RS11_ACTP2 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  128 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 451
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of CX043389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_HAEDU7.954e-1136.1130S ribosomal protein S11 OS=Haemophilus ducreyi G... [more]
RS11_GLUDA7.954e-1133.8830S ribosomal protein S11 OS=Gluconacetobacter dia... [more]
RS11_GEOMG7.954e-1136.1130S ribosomal protein S11 OS=Geobacter metalliredu... [more]
RS11_AZOVD7.954e-1137.2730S ribosomal protein S11 OS=Azotobacter vinelandi... [more]
RS11_ACTPJ7.954e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP77.954e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP27.954e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G03-N6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043389 ID=CX043389; Name=CX043389; organism=Citrus sinensis; type=EST; length=679bp
TGTATTTCGAGGCTTTTGTGATCAACTCTCCGTGTCATCAGCAGCCATGT
CAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAATGTTACTCTTGGACCT
GCCGTTAGAGATGGCGAGCATGTATTTGGCGTTGCCCACATTTTTGCGTC
GTTTAATGACACTTTCATTCATGTGACTGACTTGTCTGGAAGAGAAACTC
TTGTGCGCATTACTGGTGGTATGAAGGTTAAAGCTGACAGGGATGAATCC
TCCCCTTATGCAGCTATGCTTGCAGCACAAGATGTTTCTCAACGATGCAA
GGAGCTTGGCATTACTGCTCTTCATATTAAGCTCCGGGCTACTGGGGGTA
ACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTCAGCACTTAGAGCTCTT
GCTCGTTCTGGAATGAAGATTGGCCGCATAGAGGATGTGACTCCAATTCC
CACCGACAGTACCCGCAGAAAGGGTGGTAGAAGGGGTAGAAGGTTGTAAT
TCTTTTCCTCACACCCATCCATAACGTTCAAGATGATGCCGTGGTTACAG
AGAGTTTCACTCTCTTCTGTTAGATGCAAGAGTTATTTCCCAATTTTGTT
GTTTGGAATGTCTGTAGTCTTGGATTCCTTTGTGTTAGCCTTTCGGATCA
ATTAAGTTTATACAGTGGCAAGACTAAAA
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