EY665287

Overview
NameEY665287
Unique NameEY665287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5133 contig Csv1_Contig5133:452..1587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: ALDH1_BACSU (Probable aldehyde dehydrogenase ycbD OS=Bacillus subtilis GN=ycbD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.037e-26
Identity = 62/169 (36.69%), Postives = 98/169 (57.99%), Query Frame = 3
Query:    3 FSEKGXFLVSHIFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAGM---IPLHMELGGKNACTVLEDADLDLVAANIIKG*ISYSGK 500
            ++ +G      + P  ++     T+++PLGVV  I P+N+PV + + K+APAL+ GN++V+KP T+ AV    ++ CF  AG P G+I+ VTG GS +G  L  H  VN ++FTG +    I  +A +       +E+GGKN   V +DADL+  A  +I G    +G+
Sbjct:  119 YAGEGMRKTGDVIPSTDKDALMFTTRVPLGVVGVISPWNFPVAIPIWKMAPALVYGNTVVIKPATETAVTCAKIIACFEEAGLPAGVINLVTGPGSVVGQGLAEHDGVNAVTFTGSNQVGKIIGQAALARGAKYQLEMGGKNPVIVADDADLEAAAEAVITGAFRSTGQ 287          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.824e-24
Identity = 60/148 (40.54%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   48 NERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMV----HCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLHMELGGKNACTVLEDADLDLVAANIIK 476
            N       T K PLGV+ AI PFN+P+NLA  KI PA+  GNS+VL P ++  + A+++     H       P+G+ +  TG G  +GD ++ +  VN +SFTG  + G SISK A M  + +ELGG N   VL+D+D+ L A + +K
Sbjct:  117 NSENGLIFTKKEPLGVIGAITPFNFPLNLATHKIGPAIATGNSVVLHPSSKAPIVAIYLTKIIEHVLKQMDIPRGVFNLATGNGEIVGDEISKNDNVNMVSFTGSVEVGESISKNAKMKKVTLELGGNNPMIVLKDSDIKLAAKSAVK 264          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: LADH_METM7 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0731 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.817e-24
Identity = 59/148 (39.86%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   48 NERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMV----HCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLHMELGGKNACTVLEDADLDLVAANIIK 476
            N       T K PLGVV AI PFN+P+NL   KI PA+  GNS++L P ++  +AA+++     H       P+G+ +  TG G  +GD ++ +  +N +SFTG  + G SISK A M  + +ELGG N   VL+D+D+ L A + +K
Sbjct:  117 NSENGLIFTKKEPLGVVGAITPFNFPLNLITHKIGPAIATGNSVILHPSSKAPIAAIYLTKIIEHVLKQMDIPRGVFNLATGNGDIVGDEISKNDKINMVSFTGSVEIGESISKNAKMKKVTLELGGNNPMIVLKDSDIKLAAKSAVK 264          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: LADH_METM5 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0090 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.073e-23
Identity = 59/148 (39.86%), Postives = 86/148 (58.11%), Query Frame = 3
Query:   48 NERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMV----HCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLHMELGGKNACTVLEDADLDLVAANIIK 476
            N       T K PLGVV AI PFN+P+NL   KI PA+  GNS+VL P ++  + A+++     H       P+G+ +  TG G  +GD ++ +  +N +SFTG  + G SISK A M  + +ELGG N   VL+D+D+ L A + +K
Sbjct:  117 NSENGLIFTKKEPLGVVGAITPFNFPLNLITHKIGPAIATGNSVVLHPSSKAPIVAIYLTKIIEHVLKQMDVPRGIFNLATGNGDIVGDEISKNDNINMVSFTGSVEVGESISKNAKMKKVALELGGNNPMIVLKDSDIKLAAKSAVK 264          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_PSEFS (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=betB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.073e-23
Identity = 60/139 (43.17%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   57 TKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            T +  T + PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG DTG  +   A    L    MELGGK+   V EDADLD  A
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPAGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTDTGKKVMASASSSSLKEVTMELGGKSPLIVFEDADLDRAA 271          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.831e-23
Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = 3
Query:   57 TKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG---MIPLHMELGGKNACTVLEDADLDLVA 461
            T +  T + PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++ AL +   +  AG P G+ + VTG G+E+G +LT HP +  +SFTGG  TG  +   A    +  + MELGGK+   + +DADLD  A
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEIYTEAGLPDGVFNVVTGSGAEVGQYLTDHPGIAKVSFTGGVKTGKKVMANASGSTLKEVTMELGGKSPLIIFDDADLDRAA 271          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.391e-23
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   57 TKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            T +  T + PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  ISFTGG DTG  +   A    L    MELGGK+   + +DADLD  A
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPNGVFNVLTGSGREVGTWLTEHPRIEKISFTGGTDTGKKVMASASASSLKDVTMELGGKSPLIICDDADLDRAA 271          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_PSEF5 (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.391e-23
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   57 TKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            T +  T + PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG DTG  +   A    L    MELGGK+   + +DADLD  A
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPDGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTDTGKKVMASASSSSLKDVTMELGGKSPLIIFDDADLDRAA 271          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.123e-23
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   57 TKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            + +  T + PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++ AL +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG  TG  +   A    L    MELGGK+   V EDADLD  A
Sbjct:  133 SSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEIYTEAGLPAGVFNVLTGSGREVGQWLTEHPGIEKVSFTGGTVTGKKVMASASSSSLKEVTMELGGKSPLIVFEDADLDRAA 271          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_PSEU2 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.085e-23
Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   57 TKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            + +  T + PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G ++T HP +  +SFTGG DTG  +   A    L    MELGGK+   V +DADLD  A
Sbjct:  133 SSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPNGVFNVLTGSGREVGTWITEHPRIEKVSFTGGTDTGKKVMASASSSSLKEVTMELGGKSPLIVFDDADLDRAA 271          
The following BLAST results are available for this feature:
BLAST of EY665287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
ALDH1_BACSU1.037e-2636.69Probable aldehyde dehydrogenase ycbD OS=Bacillus s... [more]
LADH_METMP2.824e-2440.54Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METM74.817e-2439.86Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METM51.073e-2339.86Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
BETB_PSEFS1.073e-2343.17Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_SERP51.831e-2341.73Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
BETB_PSEPF2.391e-2342.45Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_PSEF52.391e-2341.73Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_PSEMY3.123e-2342.45Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
BETB_PSEU29.085e-2341.01Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665287 ID=EY665287; Name=EY665287; organism=Citrus sinensis; type=EST; length=1136bp
AATTCTCGGAGAAGGGAANGTTTTTGGTGTCCCATATCTTCCCCGGAAAT
GAGAGGACTAAGTATTGTCTCACTTCAAAGATTCCACTTGGTGTGGTTTT
GGCCATTCCACCGTTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGCCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCGAAGAAAGCTGGTATGATCCCTCTTCATAT
GGAGTTGGGAGGCAAAAATGCTTGTACCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGATGAATTTCTTACAGTGGTAAA
AATGCACTGCATTAAAGTGTCTTGGTGAAGAATCTGTACAAATTCCCTGT
CAAAAAGGTAAAGTTAATTGGAAAACTAAAATTGGCCCTCCTAAAAAAAC
TGGTAATCCATCAATTGTGTCAATTTTTGCAATTTCTTGAAGGGTGGTAG
GAAGCCAAACAAAGAAAAACATCTTAAAAAACAAGAAAAAGAACCTCACA
GGCCTTTTCTTAGAAGTGAAAAAAAATAAAACAAGGAGAAAAATTTAAAC
ATTTACCTGAATAATATGATATTTAAGAGATACACAGATAGCACACATTG
AACTAGTATTTATTCAAAGAAATTAAATATGTACAGATATAAAGAAAACT
ACCAAAAGTTCCCCCCTTGATAAAATTTTCTTTAGTGTGTACATACTATG
AATAAAGCAAAAAAACTATTCTAACTTAGACTAGAAAATCAATGCCAATA
CGGTAAAATAATGATTTGACATAGAATGATATTTAATAGAAAATTAGAAA
TAATATCAATAAGTGATATAAATTAAACCTTGATGAATGAAACGAGGAGA
GGACTAATGATGAAATACAAAAAATAATAAACAAAAAGAATAAAAAACCA
TCAAGAACTANCTAATACAATGCCGAACAACACGCA
back to top