EY665287

Overview
NameEY665287
Unique NameEY665287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: ROCA_GEOSW (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=rocA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 55/164 (33.54%), Postives = 92/164 (56.10%), Query Frame = 3
Query:   81 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI--------PLHMELGGKNACTVLEDADLDLVAANIIKG*ISYSGK--NALH*SVLVKNLY 539
            IPLGV + I P+N+P  +       +L+ GN+++LKP +   V A         AG P G+++ + G G+E+GD+L  HP    ISFTG  D GI I ++A  +         +  E+GGK+   V ++ADL+L A +I+     +SG+  +A   +++V+++Y
Sbjct:  170 IPLGVGVVISPWNFPFAIMAGTTVASLVTGNTVLLKPASATPVVAYKFAEVLEEAGLPAGVLNYIPGSGAEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDGIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVY 333          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   63 YCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            +  T + PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L    MELGGK+   V +DADLD  A
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAA 270          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   63 YCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            +  T + PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L    MELGGK+   V +DADLD  A
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAA 270          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   63 YCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            +  T + PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L    MELGGK+   V +DADLD  A
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAA 270          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   63 YCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            +  T + PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L    MELGGK+   V +DADLD  A
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAA 270          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   63 YCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            +  T + PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L    MELGGK+   V +DADLD  A
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAA 270          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: BETB_BURCA (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   63 YCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLH---MELGGKNACTVLEDADLDLVA 461
            +  T + PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L    MELGGK+   V +DADLD  A
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAA 270          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: ABDH_PECCP (Gamma-aminobutyraldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=PC1_1415 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.512e-20
Identity = 59/132 (44.70%), Postives = 79/132 (59.85%), Query Frame = 3
Query:   84 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISI-SKKAGMIP-LHMELGGKNACTVLEDADLDLVAANI 470
            P+GVV +I P+NYP+ +A  K+APAL AGN +VLKP  Q  +   ++ H       P G+++ V G+G++IGD LT H  VN +S TG   TG  I S  A  +   HMELGGK    V +DAD+D V   I
Sbjct:  138 PVGVVASIAPWNYPLMMASWKLAPALAAGNCVVLKPAEQTPLTTFYLAHLL-AEILPAGVVNIVFGRGADIGDALTGHEKVNMVSLTGSIATGAHILSHTASSVKRTHMELGGKAPVIVFDDADIDQVVDGI 268          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: ROCA2_BACHD (1-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacillus halodurans GN=rocA2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.199e-20
Identity = 53/159 (33.33%), Postives = 89/159 (55.97%), Query Frame = 3
Query:   51 ERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI--------PLHMELGGKNACTVLEDADLDLVAANIIKG*ISYSGK 500
            E  +Y  T   P+GV + I P+N+ + +        ++ GN+++LKP +   V A   V     AG PKG+++ V G G++IGD+L  HP  + I+FTG  D G+ + ++A ++         + +E+GGK+   V +DADLDL A +I+     +SG+
Sbjct:  163 EHNRYFYT---PIGVCVTISPWNFALAIMAGTTVAPIVTGNTVLLKPASTTPVVAAKFVEVLEEAGLPKGVVNFVPGSGTDIGDYLIDHPKTSLITFTGSRDVGVRLYERAAVVHPGQQHLKRVIVEMGGKDTVVVDKDADLDLAAQSIVTSAFGFSGQ 318          
BLAST of EY665287 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.199e-20
Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 3
Query:    3 FSEKGXFLVSHIFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLHMELGGKNACTVLEDADLDLVAANIIKG*ISYSGKNALH*SVLVKNLY 539
            F+E+G  +     PG++  K  +  K P+GV  AI P+N+P  +   K  PAL AG ++VLKP +Q   +AL +      AG P G+ + VTG    +G+ LT +P V  +SFTG  + G  + ++    +  + +ELGG     V +DADLD      ++G ++   +NA    V    LY
Sbjct:  119 FAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLD----KAVEGALASKFRNAGQTCVCANRLY 296          
The following BLAST results are available for this feature:
BLAST of EY665287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
ROCA_GEOSW5.512e-2033.541-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
BETB_BURVG5.512e-2043.07Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_BURS35.512e-2043.07Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
BETB_BURCJ5.512e-2043.07Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURCH5.512e-2043.07Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCC5.512e-2043.07Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCA5.512e-2043.07Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
ABDH_PECCP5.512e-2044.70Gamma-aminobutyraldehyde dehydrogenase OS=Pectobac... [more]
ROCA2_BACHD7.199e-2033.331-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacil... [more]
GABD_ECOLI7.199e-2033.52Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665287 ID=EY665287; Name=EY665287; organism=Citrus sinensis; type=EST; length=1136bp
AATTCTCGGAGAAGGGAANGTTTTTGGTGTCCCATATCTTCCCCGGAAAT
GAGAGGACTAAGTATTGTCTCACTTCAAAGATTCCACTTGGTGTGGTTTT
GGCCATTCCACCGTTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGCCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCGAAGAAAGCTGGTATGATCCCTCTTCATAT
GGAGTTGGGAGGCAAAAATGCTTGTACCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGATGAATTTCTTACAGTGGTAAA
AATGCACTGCATTAAAGTGTCTTGGTGAAGAATCTGTACAAATTCCCTGT
CAAAAAGGTAAAGTTAATTGGAAAACTAAAATTGGCCCTCCTAAAAAAAC
TGGTAATCCATCAATTGTGTCAATTTTTGCAATTTCTTGAAGGGTGGTAG
GAAGCCAAACAAAGAAAAACATCTTAAAAAACAAGAAAAAGAACCTCACA
GGCCTTTTCTTAGAAGTGAAAAAAAATAAAACAAGGAGAAAAATTTAAAC
ATTTACCTGAATAATATGATATTTAAGAGATACACAGATAGCACACATTG
AACTAGTATTTATTCAAAGAAATTAAATATGTACAGATATAAAGAAAACT
ACCAAAAGTTCCCCCCTTGATAAAATTTTCTTTAGTGTGTACATACTATG
AATAAAGCAAAAAAACTATTCTAACTTAGACTAGAAAATCAATGCCAATA
CGGTAAAATAATGATTTGACATAGAATGATATTTAATAGAAAATTAGAAA
TAATATCAATAAGTGATATAAATTAAACCTTGATGAATGAAACGAGGAGA
GGACTAATGATGAAATACAAAAAATAATAAACAAAAAGAATAAAAAACCA
TCAAGAACTANCTAATACAATGCCGAACAACACGCA
back to top