CV884469

Overview
NameCV884469
Unique NameCV884469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884469 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:   66 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 296
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of CV884469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO4.081e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003F07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884469 ID=CV884469; Name=CV884469; organism=Citrus sinensis; type=EST; length=544bp
CTGCAGCTCACTCGCTTTGCTTTCTTCCGTGCTTTTTCTCTGAAACGATC
CGCTAGGCTTCGACAATGAGCAGATCAGGCCAGCCTCCGGATCTCAAGAA
GTACATGGATAAGAAGCTTCAGATCAAGCTCAATGCTAATAGGATGATTG
TTGGAACACTTCGTGGATTTGATCAGTTTATGAATCTTGTGATTGACAAC
ACAGTTGAGGTCAATGGCAATGAGAAAAATGATATAGGGATGGTGGTTAT
CAGAGGGAATAGTGTAGTCACTGTTGAAGCCCTTGAACCGGTAAGCAAAT
CACAGTGACGTGGTTTGCCACTGGGGTCGATGTAATGTGCTTTCTGATCT
TCTTTGTGTACTATTATGAATATTAAGGCTGTTAGTATGCAATGGGAGAT
GTTTCATGCTGTTGTACCTGAGAAAATTTAGGCCATTTTCTTTGTAATGC
TTATTCTAAGGGAGCTCGTTTGAACAGGTAATTAGAATTAATCATTGAAT
GACCAATGGAATGAATCAGCAAGATTTAACAAAAAAAAAAAAAA
back to top