EY665281

Overview
NameEY665281
Unique NameEY665281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1168
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.840e-16
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  234 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANY 545
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++      L+  PNP DP + E   ++ TD   Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL--RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.840e-16
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  234 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANY 545
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++      L+  PNP DP + E   ++ TD   Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL--RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.840e-16
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  234 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANY 545
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++      L+  PNP DP + E   ++ TD   Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL--RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.554e-16
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 3
Query:  135 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYK 548
            R+A+E     ++ P    A P        +L  W  +I G + + + GG F L++HF  DYP KPPK  F    +HPN+  SG +CL IL +   W PA+T+ ++      L+   NP DP + E   ++ TD A Y+
Sbjct:    6 RIAKELSDLGRDPPASCSAGPV-----GDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYE 136          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.554e-16
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  222 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYKEKFGTRQR 572
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++      L+  PNP DP + +   ++ +D    KEK+    R
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL--RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSD----KEKYNRHAR 139          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.554e-16
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  222 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYKEKFGTRQR 572
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++      L+  PNP DP + +   ++ +D    KEK+    R
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL--RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSD----KEKYNRHAR 139          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.554e-16
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  222 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYKEKFGTRQR 572
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++      L+  PNP DP + +   ++ +D    KEK+    R
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL--RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSD----KEKYNRHAR 139          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.489e-15
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  234 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANY 545
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  + ++CL IL   + W PA+T+ ++      L+  PNP DP + E   ++ TD   Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDIL--RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.246e-15
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  201 TLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYKEK 554
            ++   S N+  W   I G  GT +EGG F L++ F  DYP KPPK  F    +HPN+   G++C++IL   + W PA+ V ++      L+ +PNP DP + E   LF  +   + ++
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNIL--KDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQR 143          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.246e-15
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  234 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANY 545
            W  TI G   + ++GG F LT+ F  +YP KPPK +F    +HPNV  +G++CL IL   + W PA+T+ ++      L+  PNP DP + E   ++ TD   Y
Sbjct:   33 WQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDIL--RSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKY 134          
The following BLAST results are available for this feature:
BLAST of EY665281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
UB2D3_MACFA3.840e-1639.42Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN3.840e-1639.42Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG3.840e-1639.42Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC5_YEAST8.554e-1634.06Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D1_MOUSE8.554e-1637.61Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN8.554e-1637.61Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN8.554e-1637.61Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UB2D3_BOVIN2.489e-1538.46Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC31_ARATH4.246e-1534.75Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
U2D2B_RAT4.246e-1538.46Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665281 ID=EY665281; Name=EY665281; organism=Citrus sinensis; type=EST; length=1168bp
ATCAGCCCCATCTTCACTTATAGCCCACCCTTTTTAAAAAAAAAGGAGAA
TAATAATTCATTTTCATTATTTAGTGTTTTTGAGAGCGAGTAAAAGAAAA
GGAAAGAGCGATGTCGGGAGGCATAGCACGTGGTCGGCTGGCTGAGGAGC
GAAAGTCGTGGCGTAAAAATCATCCTCATGGTTTCGTGGCAAAGCCTGAG
ACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTCC
CGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTCC
ACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCAA
GGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCTAT
CCTCATTGAAGACAATGGGTGGAGACCAGCCATCACAGTGATCCAAATTC
CTTGTCGGTATCCATGACTGGTGGGACAGCCCAATCCTGCAGATCCTGCC
ATACAAGAAGGTTATCATCTCTTCTTTACAGATGCTGCAAATTACAAAGA
AAAGTTCGGCACACGCCAACGAATACCCTGCACTCCCCCAAATTTATGGT
CTGGTTTTTTATGGGATTTTTTAAACCTCTGGAATTGGGAACTGCTTTTT
GGAAATGCCTTCGCTACTTTGCTTTGAATAAAGGTACCTTTGGAAAAAAA
AAAATAAAAAAAAAAAAGGGGGGCGCCCTAAAGAAAAAGTTATATACGCG
GGGGGGCACGCAACCCTTTAATGGGCCACAATTTTTTCCCGGGGCGGTTT
TACAACCATGGGGGAAACACGGGGTTCCAACTAACTCCTTGGGCCCCCCC
TTTCCCCGGGGTATAAGAGAGAGCCCCCTTTTCTCTCTCAAATTCCCTCA
TAAGAGAAGGGACCCCGATGACACTAACGCGTGGGGGGGGTTAAGAGAGC
TCTTTCAGAGCCACCTCACTTCTTCTCTCTTTTCCAACTCCAGGTTCATT
ATAATGGAGGTTATGTAATTATTTATGCCACAAAAAAAATAGGTGTTGCT
TCCCTCCCCACTCTCTATTCTCAATTTGTTATATTGCACTTATCACCCTT
CTCTTGTTTGGCATATACTATATATTTTATTTCTTCGGATGCTGTTGAAT
ATTTATTTGATTTTTTCA
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