EY665281

Overview
NameEY665281
Unique NameEY665281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1168
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.190e-13
Identity = 59/169 (34.91%), Postives = 80/169 (47.34%), Query Frame = 3
Query:   87 RVKEKERAMSGGIARG----RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYK----EKFGTRQ 569
            R KE+ R M+    R     RL +E ++   +   G  A     PDG  NL  W  T+ G   T +E   + LTL F  DYP KPP  KF    +HPNV  SG +CL IL E+  W  +  V  I      L+G+PN A P   +   + +++   YK    EK+ T Q
Sbjct:   14 RQKERPRDMTTSKERHSVSKRLQQELRTLLMSGDPGITA----FPDGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASPLNAQAADM-WSNQTEYKKVLHEKYKTAQ 174          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.190e-13
Identity = 42/95 (44.21%), Postives = 46/95 (48.42%), Query Frame = 3
Query:  120 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 404
            G A  RL  E K    N P G VA P        N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL
Sbjct:    3 GTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL 93          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.190e-13
Identity = 42/95 (44.21%), Postives = 46/95 (48.42%), Query Frame = 3
Query:  120 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 404
            G A  RL  E K    N P G VA P        N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL
Sbjct:    3 GTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL 93          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.190e-13
Identity = 42/95 (44.21%), Postives = 46/95 (48.42%), Query Frame = 3
Query:  120 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 404
            G A  RL  E K    N P G VA P        N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL
Sbjct:    3 GTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL 93          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.190e-13
Identity = 42/95 (44.21%), Postives = 46/95 (48.42%), Query Frame = 3
Query:  120 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 404
            G A  RL  E K    N P G VA P        N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL
Sbjct:    3 GTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL 93          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.156e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  222 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANY 545
            N+  W  TI G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL IL +DN W PA+T+ ++      L+   NPADP +      + T+ A +
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-KDN-WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH 180          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.156e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  222 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANY 545
            N+  W  TI G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL IL +DN W PA+T+ ++      L+   NPADP +      + T+ A +
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-KDN-WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH 180          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.972e-12
Identity = 49/147 (33.33%), Postives = 66/147 (44.90%), Query Frame = 3
Query:  108 AMSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYK 548
            A+ G     RL  E  S   ++  G  A     PD   NL+ W  TI G + T +EG  F +++ F  +YP  PP   F    +HPNV  SG +CL IL   + W     V  I      L+G+PN A P   +   L+  D   YK
Sbjct:   23 AVDGHSVTKRLRSELMSLMMSNTPGISA----FPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDIL--KDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.364e-12
Identity = 42/121 (34.71%), Postives = 62/121 (51.24%), Query Frame = 3
Query:  135 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILIEDNGWRPAITVIQIPCRYP*LVGQPNPADP 497
            R+ +E ++  ++ P G VA P        NL  +  T+ G   + +EGG F L L   ++YP  PP  +F    +HPNV   G +CLS L +D  W PA+ +  +      L+G PNP DP
Sbjct:    6 RIIKEIETLTRDPPPGIVAAPT-----EDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKD--WSPALQIRTVLLSIQALMGAPNPDDP 119          
BLAST of EY665281 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.364e-12
Identity = 41/122 (33.61%), Postives = 56/122 (45.90%), Query Frame = 3
Query:  222 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------IEDNGWRPAITVIQIPCRYP*LVGQPNPADPAIQEGYHLFFTDAANYKEK 554
            N+  W  TI G   T +EGGFF   + F ++YP+ PP  +F    +HPNVYP G VC+SIL           +    W P  TV  I      ++  PN   PA  E    +      +K+K
Sbjct:   33 NIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKK 154          
The following BLAST results are available for this feature:
BLAST of EY665281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
UBE2C_SPISO5.190e-1334.91Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UB2G2_PONAB5.190e-1344.21Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.190e-1344.21Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.190e-1344.21Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN5.190e-1344.21Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UB2E1_MOUSE1.156e-1237.04Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN1.156e-1237.04Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC11_SCHPO1.972e-1233.33Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC13_SCHPO3.364e-1234.71Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC13_ARATH3.364e-1233.61Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665281 ID=EY665281; Name=EY665281; organism=Citrus sinensis; type=EST; length=1168bp
ATCAGCCCCATCTTCACTTATAGCCCACCCTTTTTAAAAAAAAAGGAGAA
TAATAATTCATTTTCATTATTTAGTGTTTTTGAGAGCGAGTAAAAGAAAA
GGAAAGAGCGATGTCGGGAGGCATAGCACGTGGTCGGCTGGCTGAGGAGC
GAAAGTCGTGGCGTAAAAATCATCCTCATGGTTTCGTGGCAAAGCCTGAG
ACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTCC
CGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTCC
ACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCAA
GGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCTAT
CCTCATTGAAGACAATGGGTGGAGACCAGCCATCACAGTGATCCAAATTC
CTTGTCGGTATCCATGACTGGTGGGACAGCCCAATCCTGCAGATCCTGCC
ATACAAGAAGGTTATCATCTCTTCTTTACAGATGCTGCAAATTACAAAGA
AAAGTTCGGCACACGCCAACGAATACCCTGCACTCCCCCAAATTTATGGT
CTGGTTTTTTATGGGATTTTTTAAACCTCTGGAATTGGGAACTGCTTTTT
GGAAATGCCTTCGCTACTTTGCTTTGAATAAAGGTACCTTTGGAAAAAAA
AAAATAAAAAAAAAAAAGGGGGGCGCCCTAAAGAAAAAGTTATATACGCG
GGGGGGCACGCAACCCTTTAATGGGCCACAATTTTTTCCCGGGGCGGTTT
TACAACCATGGGGGAAACACGGGGTTCCAACTAACTCCTTGGGCCCCCCC
TTTCCCCGGGGTATAAGAGAGAGCCCCCTTTTCTCTCTCAAATTCCCTCA
TAAGAGAAGGGACCCCGATGACACTAACGCGTGGGGGGGGTTAAGAGAGC
TCTTTCAGAGCCACCTCACTTCTTCTCTCTTTTCCAACTCCAGGTTCATT
ATAATGGAGGTTATGTAATTATTTATGCCACAAAAAAAATAGGTGTTGCT
TCCCTCCCCACTCTCTATTCTCAATTTGTTATATTGCACTTATCACCCTT
CTCTTGTTTGGCATATACTATATATTTTATTTCTTCGGATGCTGTTGAAT
ATTTATTTGATTTTTTCA
back to top